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Citrus Greening-HLB Genome Resources
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View in Artemis


 
View genomes in Artemis via remote launch (for high speed connections)

view sample Artemis display (example shows data for the phytopathogen, Pseudomonas syringae)
  1. Genome records deposited at NCBI can be read directly by the Artemis genome viewer if the accession number is known

    Sequence EBI/Genbank accession number
    Ca. Liberibacter asiaticus Psy62 CP001677

  2. Go to the Artemis Release page at Sanger
    Click on the Download tab that appears there. Scroll down.
    Under Download version 12>Java Web Start, click on launch

    The Artemis Release 12 launch window will appear

  3. Go to "File>Open EBI Dbfetch" in the Artemis launch window menu.
    When prompted, enter the EBI/Genbank accession number (see the table above) of the entry you wish to view.

  4. Artemis can display multiple feature files superimposed on the main entry.
    To download feature files that have been generated for CG-HLB Genome Resources, go to the Genome Resources page, open feature files of interest (where applicable), and save using the extension indicated in the file name (e.g. .txt. .tab or .gff.) (Note that you will be asked to register prior to accessing data files)

  5. To load features files for visualization with the associated sequence file, go to the menu of the main Artemis window: File>Read an Entry...
    A window will open that allows you to navigate to your feature file of interest.
    Once you have selected the file to read, click on "Open".
    For more details on use and manipulation of files in Artemis see the resources listed below.

View sample Artemis display with feature files

 

View genomes in Artemis via downloaded program and sequence files

In some cases it may be preferable to download the Artemis program rather than launching it remotely.

1. To download the Artemis program go to the Artemis Release page at Sanger and follow the instructions appropriate for your operating system.

2. To download the genome sequence and annotation click on the accession number below and save as a text file

Sequence EBI/Genbank accession number
Ca. Liberibacter asiaticus Psy62 CP001677

For additional information on running Artemis from your local system, as well as using its various features, go to the following resources:

Artemis tutorial

Artemis manual from Sanger

Artemis FAQ

 


FCPRAC Cornell website optimized for viewing with the Firefox web browser

For assistance or comments on CG-HLB genome resources contact