tree-3
Citrus Greening-HLB Genome Resources
other genome resources
contact

Citrus greening-HLB genome resources at NCBI


Over 1500 nucleotide sequences from Ca Liberibacter have been deposited at NCBI with the majority falling into one of three gene clusters. Alignment of a Ca Liberibacter draft genome sequence with sequences in the three gene clusters are shown together with links to associated publications and sequence files. For a comprehensive list of publications on Liberibacter and despoisted liberibacter sequences, use the links below with the search term "liberibacter".

link to NCBI homepage (for sequences)
link to PubMed homepage (for publications)

Gene organization
Draft genome and gene cluster sequences available at NCBI
View genome using the Artemis genome viewer
(here)
Genome sequence (1.23 Mb)

Strain: Candidatus Liberibacter asiaticus str. psy62 (Las psy62) (taxonomy)
Source: Isolated from Diaphorina citri strain Kuwayama (Asia citrus psyllid), whole adult

Authors/Depositors: Duan,Y.P., Zhou,L.J., Hall,D., Li,W.B., Doddapaneni, H., Lin,H., Liu, L., Vahling, C. M., Gabriel, D., Williams, K. P., Dickerman, A., Sun, Y., and Gottwald,T.R., 09-07-21
Publication: Complete Genome Sequence of Citrus Huanglongbing Bacterium, ‘Candidatus Liberibacter asiaticus’ Obtained Through Metagenomics. Duan, et al. MPMI 22:1011-1020 (abstract)
Accession number: CP001677 (see genome project)
NOTE: This accession replaces accessions ABQW01000000 (RefSeq NZ_ABQW00000000), corresponding to the draft version of the genome
BLAST complete genome sequence (page currently under construction at NCBI)

Sequenced region aligned with Las psy62
tsf-cds2
Click to see larger image

Gene cluster sequence [tsf-pyrH-frr-cdsA2-zmpA-omp-lpxD-fabZ-lpxA-cds2] ~10 kb

Strain: Candidatus Liberibacter asiaticus str. GuangXi-GL-1
Source: extracted from leaf midrib of infected citrus

Authors: Lin et al
Publication:
.Mol. Cell. Probes 22 (1), 30-37 (2008) Pubmed: 17689920

Accessions corresponding to this region: EF164804, EF164806

Authors: Doddapaneni et al
Publication: BMC Res Notes 1:72 (2008) PubMed: 18755041
Accessions corresponding to this region: EU523377, EU523378

Strain: Candidatus Liberibacter asiaticus str. Poona
Source: extracted from leaf midrib of infected citrus

Authors: Bastianel et al
Publication:
AEM 71 (11), 6473-78 (2005) Pubmed: 16269671
Accessions corresponding to this region: AY642159

Sequenced region aligned with Las psy62
suhB-rpoC
Click to see larger image

Gene cluster sequence [suhB-serA-trmU-tufB-sec-nusG-rplKAJL-rpoBC] ~17 kb

Strain: Candidatus Liberibacter asiaticus str. GuangXi-GL-1
Source: extracted from leaf midrib of infected citrus

Authors: Doddapaneni et al
Publication: BMC Res Notes 1:72 (2008) Pubmed: 18755041
Accessions corresponding to this region: EU523380, EU523379

Authors/Depositors: Lin et al
Publication:
.Mol. Cell. Probes 22 (1), 30-37 (2008) Pubmed: 17689920
Accessions corresponding to this region: EF164805

Strain: Candidatus Liberibacter americanus str. Sao Paulo
Source: extracted from infected periwinkle
Strain: Candidatus Liberibacter asiaticus str. Poona
Source: extracted from infected periwinkle
Strain: Candidatus Liberibacter africanus str. Nelspruit
Source: extracted from infected periwinkle

Authors: Teixeira et al
Publication:
Int. J. Syst. Evol. Microbiol. 58 (PT 6), 1414-1421 (2008) Pubmed: 18523188
Accessions corresponding to this region: EF122254 (Lam), EU078703 (Las), EF122255 (Laf)

Selected accessions for this region aligned with Las psy62
rRNAregion
Click to see larger image

Gene cluster sequence - [16S-23S rRNA region] <5 kb
Strains: many (routinely sequenced for strain identification)
Authors/Depositors: many

FCPRAC CU-logo twitterlogo

follow us on Twitter
website optimized for viewing with the Firefox web browser

For assistance or comments on CG-HLB genome resources contact

 

 

 

 

 

 

CRDF twitterlogo