This directory contains additional resources for the genome

GeneValidator/
Detailed reports of all OGS v2.0 models when compared to insect protein databases. Please see the GeneValidator/README for details.


bowtie2-2.3.4.1_index/
Bowtie2 index for the genome build the following command
bowtie2-build --verbose --threads 32 Diaci_v2.0.ref.fasta Diaci_v2.0.ref.fasta


hisat2-2.1.0_index/
This contains the index for the genome built using hisat2-2.1.0 with the following parameters: 
hisat2-build -p 32 Diaci_v2.0.ref.fasta Diaci_v2.0.ref.fasta

The name of the index is Diaci_v2.0.ref.fasta. The splice site was created using gffread and hisat2 scripts. Please use Dcitr_OGSv2.0.gffread.gtf.ss file during alignment as a list of known splice sites.
Dcitr_OGSv2.0.gffread.gtf
Dcitr_OGSv2.0.gffread.gtf.ss