We are releasing a interim Pacbio assembly (Diaci v1.9) for the ACP genome that is a major improvement over the current genome (Diaci v1.1). Diaci v1.9 has 8,352 contigs compared to 161,988 contigs in the current genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. You can download the genome at our
FTP site. Please note that this is an interim assembly so we will not be annotating it but you can
blast DNA and protein sequences to it. [Nov 16, 2016]
DiaphorinaCyc 1.0 was created with NCBI Gnomon gene models and added to the site. The PGDB contains 12543 genes and 185 pathways with 1524 enzymatic reactions. [May 8, 2016]
We have created new pathway databases for all the
Candidatus Liberibacter genomes. You can find databases for
CLas psy62,
CLas gxpsy,
CLas Ishi-1,
CLam Sao Paulo,
CLso ZC1 and
CLcresens. [Apr 27, 2016]
We have added tracks showing coverage of whole genome shotgun contigs from paired-end DNAseq data to the
Diaphorina citri jbrowse. [Apr 04, 2016]
We have added quantitative tracks for all RNAseq data available for
Diaphorina citri jbrowse. Now along with mapped RNAseq reads, gene expression data can also be visualized using density and XY plot. RNAseq data from
Vyas et. al. 2015 has also been added to Jbrowse. [Feb 15, 2016]
We have added the genome page for
Ca. Liberibacter asiaticus strain psy62 with links to the
JBrowse page and other resources. [Nov 29, 2015]
We have reorganized and added new websites to the
CitrusGreening Links page [Oct 30, 2015]
We have added sections with information about the
CitrusGreening disease and the
psyllid genome annotation process. [Sep 14, 2015]
The CitrusGreening portal has been upgraded using the
Bootstrap framework to make it responsive on any browsing platform. Please send us your
feedback. [Sep 4, 2015]
New blast
databases have been added for Liberibacter species. [Aug 25, 2015]
New genome page has been added for
Diaphorina citri . [Aug 10, 2015]
New genome pages have been added for
Citrus clementina and
Citrus sinensis. [July 22, 2015]
New blast
databases have been added for Citrus and Psyllid. [July 17, 2015]
The project basecamp
site is now available. We will use this to coordinate meetings and activities for the project. [April 22, 2015]
CG.org is now online. Please check back for updates. [April 03, 2015]