BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_rna.fa 25,292 sequences; 49,157,538 total letters Query= 05681 Length=687 Score E Sequences producing significant alignments: (Bits) Value DcitrM069505.1.1Unknown protein. Similar to MCOT12935.3.CO. AED 0.18 691 0.0 DcitrM069505.1.2Unknown protein. AED 0.03 673 0.0 DcitrM070845.1.3Golgin subfamily A member 6-like protein 1 (AHRD ... 75.0 9e-13 DcitrM070845.1.2Golgin subfamily A member 6-like protein 1 (AHRD ... 75.0 9e-13 DcitrM070845.1.1Golgin subfamily A member 6-like protein 1 (AHRD ... 75.0 9e-13 DcitrM070840.1.1Unknown protein. AED 0.41 75.0 9e-13 DcitrM070830.1.1Unknown protein. AED 0.24 75.0 9e-13 >DcitrM069505.1.1 Unknown protein. Similar to MCOT12935.3.CO. AED 0.18 Length=672 Score = 691 bits (374), Expect = 0.0 Identities = 491/541 (91%), Gaps = 33/541 (6%) Strand=Plus/Plus Query 1 ATGGAGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 ATGGAGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATC 213 Query 61 ACTTTGGTACAATGTAGCGGTTGCCTTCCCCGTTTGCGTGGTTCTAACAACCCAAAGCAC 120 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 214 ACTTTGGTACAATGTGGCGGTTGCCTTCCCCGTTTGCGTGGTTCTAAGAACCCAAAGCAC 273 Query 121 AACAAACAGAAAGCTAGGTGGACATTTTCAAATGAACCCCAGAAGGAGAAGAGCGGAGAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 AACAAACAGAAAGCTAGGTGGACATTTTCAAATGAACCCCAGAAGGAGAAGAGCGGAGAG 333 Query 181 GCGAAGGAAAAGCACATCATCCCCGACCCAAAGTCAAACCCGTTAAACAGGTCCGACCCA 240 ||||||||||||||||||| |||||| ||||||||||| |||| | |||||| Sbjct 334 GCGAAGGAAAAGCACATCAACCCCGATCCAAAGTCAAA------AAAC---CCAGACCCA 384 Query 241 AAGTCAAA-AAACCCAGACCCAAAGTCAGGGAAACGCCGACCTAAGATCTGGAGTGAAAA 299 |||||| | |||| | |||| || | ||||||||||||| Sbjct 385 AAGTCAGAGAAACGCCGACCTAAGG----------------------TCTGGAGTGAAAA 422 Query 300 TTCAAAGTATAGCGTTGGTAATTCCAGTCAAGGCATTAAGGGTCCGAAAGCCGCTAACCC 359 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 423 TTCAAAGTATAGCGTTGGTGATTCCAGTCAAGGCATTAAGGGTCCGAAAGCCGCTAACCT 482 Query 360 TCCGGGTTCAAAAGCCGCTACCAATTCAGAAGATCGATATAAAATGCGACTCACAGATAA 419 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 TCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGATATAAAATGCGACTCACAGATAA 542 Query 420 GGAAATGGCAGAGATCGGAAACAAATTGATATATACAGATCTTGGATATAACCAGGGTCC 479 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 GGAAATGGCAGAGATTGGAAACAAATTGATATATACAGATCTTGGATATAACCAGGGTCC 602 Query 480 GAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT-ATAAAA 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 603 GAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGATNAAAAAA 662 Query 539 T 539 | Sbjct 663 T 663 Score = 346 bits (187), Expect = 2e-94 Identities = 198/203 (98%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 473 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 461 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 520 Query 533 ATAAAATGCGACTCACAGATAAGGAAATGGCAGAGATCGGAAACAAATTGATATATACAG 592 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 521 ATAAAATGCGACTCACAGATAAGGAAATGGCAGAGATTGGAAACAAATTGATATATACAG 580 Query 593 ATCTTGGATATAACCAGGGTCCGAAAGCCGCTAACCCTCCGGGTCCAAAAGCCGCTACCA 652 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 581 ATCTTGGATATAACCAGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCA 640 Query 653 ATTCAGAAGATCGAT-ATAAAAT 674 ||||||||||||||| | ||||| Sbjct 641 ATTCAGAAGATCGATNAAAAAAT 663 Score = 128 bits (69), Expect = 6e-29 Identities = 78/82 (95%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 608 AGGGTCCGAAAGCCGCTAACCCTCCGGGTCCAAAAGCCGCTACCAATTCAGAAGATCGAT 667 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 461 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 520 Query 668 ATAAAATGCGAC-C-CAGATAA 687 |||||||||||| | ||||||| Sbjct 521 ATAAAATGCGACTCACAGATAA 542 Score = 97.1 bits (52), Expect = 2e-19 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 338 AGGGTCCGAAAGCCGCTAACCCTCCGGGTTCAAAAGCCGCTACCAATTCAGAAGATCGAT 397 ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| Sbjct 596 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 655 Query 398 -ATAAAAT 404 | ||||| Sbjct 656 NAAAAAAT 663 >DcitrM069505.1.2 Unknown protein. AED 0.03 Length=963 Score = 673 bits (364), Expect = 0.0 Identities = 486/539 (90%), Gaps = 33/539 (6%) Strand=Plus/Plus Query 1 ATGGAGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 ATGGAGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATC 213 Query 61 ACTTTGGTACAATGTAGCGGTTGCCTTCCCCGTTTGCGTGGTTCTAACAACCCAAAGCAC 120 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 214 ACTTTGGTACAATGTGGCGGTTGCCTTCCCCGTTTGCGTGGTTCTAAGAACCCAAAGCAC 273 Query 121 AACAAACAGAAAGCTAGGTGGACATTTTCAAATGAACCCCAGAAGGAGAAGAGCGGAGAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 AACAAACAGAAAGCTAGGTGGACATTTTCAAATGAACCCCAGAAGGAGAAGAGCGGAGAG 333 Query 181 GCGAAGGAAAAGCACATCATCCCCGACCCAAAGTCAAACCCGTTAAACAGGTCCGACCCA 240 ||||||||||||||||||| |||||| ||||||||||| |||| | |||||| Sbjct 334 GCGAAGGAAAAGCACATCAACCCCGATCCAAAGTCAAA------AAAC---CCAGACCCA 384 Query 241 AAGTCAAA-AAACCCAGACCCAAAGTCAGGGAAACGCCGACCTAAGATCTGGAGTGAAAA 299 |||||| | |||| | |||| || | ||||||||||||| Sbjct 385 AAGTCAGAGAAACGCCGACCTAAGG----------------------TCTGGAGTGAAAA 422 Query 300 TTCAAAGTATAGCGTTGGTAATTCCAGTCAAGGCATTAAGGGTCCGAAAGCCGCTAACCC 359 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 423 TTCAAAGTATAGCGTTGGTGATTCCAGTCAAGGCATTAAGGGTCCGAAAGCCGCTAACCT 482 Query 360 TCCGGGTTCAAAAGCCGCTACCAATTCAGAAGATCGATATAAAATGCGACTCACAGATAA 419 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 TCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGATATAAAATGCGACTCACAGATAA 542 Query 420 GGAAATGGCAGAGATCGGAAACAAATTGATATATACAGATCTTGGATATAACCAGGGTCC 479 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 GGAAATGGCAGAGATTGGAAACAAATTGATATATACAGATCTTGGATATAACCAGGGTCC 602 Query 480 GAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGATATAAAA 538 |||||| ||||||| |||||||||||| |||||||||||||||||||||||| | |||| Sbjct 603 GAAAGCTGCTAACCCTCCGGGTCCGAAGGCCGCTACCAATTCAGAAGATCGA-ANAAAA 660 Score = 339 bits (183), Expect = 3e-92 Identities = 195/201 (97%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 473 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 461 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 520 Query 533 ATAAAATGCGACTCACAGATAAGGAAATGGCAGAGATCGGAAACAAATTGATATATACAG 592 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 521 ATAAAATGCGACTCACAGATAAGGAAATGGCAGAGATTGGAAACAAATTGATATATACAG 580 Query 593 ATCTTGGATATAACCAGGGTCCGAAAGCCGCTAACCCTCCGGGTCCAAAAGCCGCTACCA 652 |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| Sbjct 581 ATCTTGGATATAACCAGGGTCCGAAAGCTGCTAACCCTCCGGGTCCGAAGGCCGCTACCA 640 Query 653 ATTCAGAAGATCGATATAAAA 673 |||||||||||||| | |||| Sbjct 641 ATTCAGAAGATCGA-ANAAAA 660 Score = 128 bits (69), Expect = 6e-29 Identities = 78/82 (95%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 608 AGGGTCCGAAAGCCGCTAACCCTCCGGGTCCAAAAGCCGCTACCAATTCAGAAGATCGAT 667 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 461 AGGGTCCGAAAGCCGCTAACCTTCCGGGTCCGAAAGCCGCTACCAATTCAGAAGATCGAT 520 Query 668 ATAAAATGCGAC-C-CAGATAA 687 |||||||||||| | ||||||| Sbjct 521 ATAAAATGCGACTCACAGATAA 542 Score = 89.8 bits (48), Expect = 3e-17 Identities = 60/66 (91%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 338 AGGGTCCGAAAGCCGCTAACCCTCCGGGTTCAAAAGCCGCTACCAATTCAGAAGATCGAT 397 ||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||| Sbjct 596 AGGGTCCGAAAGCTGCTAACCCTCCGGGTCCGAAGGCCGCTACCAATTCAGAAGATCGA- 654 Query 398 ATAAAA 403 | |||| Sbjct 655 ANAAAA 660 >DcitrM070845.1.3 Golgin subfamily A member 6-like protein 1 (AHRD V3.11 *-* tr|E2B5N0|E2B5N0_HARSA). AED 0.10 Length=1606 Score = 75.0 bits (40), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5 AGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATCACTT 64 |||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| |||| | Sbjct 87 AGATGTCAAGGGTTACCAAAATGGTTGTGATAGTTTGTCTGCTGAGTCAACTTATCATGT 146 Query 65 TGGT 68 |||| Sbjct 147 TGGT 150 >DcitrM070845.1.2 Golgin subfamily A member 6-like protein 1 (AHRD V3.11 *-* tr|E2B5N0|E2B5N0_HARSA). AED 0.04 Length=1815 Score = 75.0 bits (40), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5 AGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATCACTT 64 |||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| |||| | Sbjct 185 AGATGTCAAGGGTTACCAAAATGGTTGTGATAGTTTGTCTGCTGAGTCAACTTATCATGT 244 Query 65 TGGT 68 |||| Sbjct 245 TGGT 248 >DcitrM070845.1.1 Golgin subfamily A member 6-like protein 1 (AHRD V3.11 *-* tr|E2B5N0|E2B5N0_HARSA). AED 0.22 Length=2149 Score = 75.0 bits (40), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5 AGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATCACTT 64 |||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| |||| | Sbjct 229 AGATGTCAAGGGTTACCAAAATGGTTGTGATAGTTTGTCTGCTGAGTCAACTTATCATGT 288 Query 65 TGGT 68 |||| Sbjct 289 TGGT 292 >DcitrM070840.1.1 Unknown protein. AED 0.41 Length=237 Score = 75.0 bits (40), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5 AGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATCACTT 64 |||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| |||| | Sbjct 11 AGATGTCAAGGGTTACCAAAATGGTTGTGATAGTTTGTCTGCTGAGTCAACTTATCATGT 70 Query 65 TGGT 68 |||| Sbjct 71 TGGT 74 >DcitrM070830.1.1 Unknown protein. AED 0.24 Length=640 Score = 75.0 bits (40), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5 AGATTTCAGGGGTTACCAAGATGGTTGTGATTGTTTGTCTGCTGTGTCAACTCATCACTT 64 |||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| |||| | Sbjct 237 AGATGTCAAGGGTTACCAAAATGGTTGTGATAGTTTGTCTGCTGAGTCAACTTATCATGT 296 Query 65 TGGT 68 |||| Sbjct 297 TGGT 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32123707556 Database: Dcitr_OGSv2.0_rna.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 49,157,538 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5