BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitri_transcriptome.fasta 60,261 sequences; 104,618,276 total letters Query= DC13G022400.1 Length=1239 Score E Sequences producing significant alignments: (Bits) Value DcDTr12370.1Gag-Pol polyprotein 2261 0.0 >DcDTr12370.1 Gag-Pol polyprotein Length=3036 Score = 2261 bits (1224), Expect = 0.0 Identities = 1230/1233 (99%), Gaps = 0/1233 (0%) Strand=Plus/Plus Query 7 ATGCCGAACCAGCCATTCAACAAACGCGCTGAAGCCCTCGCCCCTAAGAAATCAGGTGGG 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 ATGCCGAACCAGCCATTCAACAAACGCGCTGAAGCCCTCGCCCCTAAGAAATCAGGTGGG 287 Query 67 AAAAAGAAGACTTGGGCGAAAAAGACTGGATTTAAGCCCCGCAAGGAGGCAATCTCGGCA 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 288 AAAAAGAAGACTTGGGCGAAAAAGACTGGATTTAAGCCCCGCAAGGAGGCAATATCGGCA 347 Query 127 GACGATCCTGGGAGGCAGCCCAACCCACTGGCTACTGCAGTCAGAGACCGACGAGAGCCA 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 GACGATCCTGGGAGGCAGCCCAACCCACTGGCTACTGCAGTCAGAGACCGACGAGAGCCA 407 Query 187 TTAGACCTCCAGGATCTTGAGGAAGCGTTAAAGCCTCAAGCAAAAGGTTTGGCGCCACCG 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 TTAGACCTCCAGGATCTTGAGGAAGCGTTAAAGCCTCAAGCAAAAGGTTTGGCGCCACCG 467 Query 247 ACCAAGCCGAAGAACGACCCCACTGACCTCGAGGCCTTTGCCTGCCTTGGGTTGTCAGGA 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 ACCAAGCCGAAGAACGACCCCACTGACCTCGAGGCCTTTGCCTGCCTTGGGTTGTCAGGA 527 Query 307 TTTTCAACTCAGGTACCGATCCATGAAATCACAACTGATGATTCTGGCTACATTGACATC 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 TTTTCAACTCAGGTACCGATCCATGAAATCACAACTGATGATTCTGGCTACATTGACATC 587 Query 367 GCTGAGTCTGTCTATGAGATTTACTGTCTTAAGGACAAGTATTTCTCACGCTCTGTTCCC 426 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 GCTGAGTATGTCTATGAGATTTACTGTCTTAAGGACAAGTATTTCTCACGCTCTGTTCCC 647 Query 427 CGCTCCTTCTTCCAATACTATTGCAGTATGCTGCTTTGGTGGAAGAAGCTGCACACAATG 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 CGCTCCTTCTTCCAATACTATTGCAGTATGCTGCTTTGGTGGAAGAAGCTGCACACAATG 707 Query 487 AGACCAACTGCTCACGTTATCCGAGCGTTGGGATCATTAAAACAGTATATGCCCCCCAAC 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 AGACCAACTGCTCACGTTATCCGAGCGTTGGGATCATTAAAACAGTATATGCCCCCCAAC 767 Query 547 CCTGCAGTTCCCAAACTGTTAGGTCTTTACCTCCAGGGGCTAGACAGATACACCGATGTG 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 CCTGCAGTTCCCAAACTGTTAGGTCTTTACCTCCAGGGGCTAGACAGATACACCGATGTG 827 Query 607 AGTGGAGTAGAATGGACTCCGGTGTACACCCTTCCTGATGAAGACCCCATCAACGGGATG 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 AGTGGAGTAGAATGGACTCCGGTGTACACCCTTCCTGATGAAGACCCCATCAACGGGATG 887 Query 667 ACTGGCCTTTTCGGTCCAATGGATGAGGTCACTTTTGGCCTATATCTCAGCCAGTTCTAC 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 ACTGGCCTTTTCGGTCCAATGGATGAGGTCACTTTTGGCCTATATCTCAGCCAGTTCTAC 947 Query 727 CCAGGTCTTTGCGCTATGTCCATTCTCAATGACATTAGCGTCACTAACAGTCCACCAGGT 786 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 CCAGATCTTTGCGCTATGTCCATTCTCAATGACATTAGCGTCACTAACAGTCCACCAGGT 1007 Query 787 ATTGACACGGCCTACAGACTTCCCTATCAGGCCGATGTAGCACGACGCCTTACACGAAAT 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 ATTGACACGGCCTACAGACTTCCCTATCAGGCCGATGTAGCACGACGCCTTACACGAAAT 1067 Query 847 GCGCTCGGCTTCAGTCCCGGTGTTAGACTCGACAGGATATGTGTGAACACACTCGAGCCT 906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 GCGCTCGGCTTCAGTCCCGGTGTTAGACTCGACAGGATATGTGTGAACACACTCGAGCCT 1127 Query 907 TTCGGTATCTCCTCCATCCGAACACCAGAATTGGTACATGCCAACATCCGGTTTGGAGTG 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TTCGGTATCTCCTCCATCCGAACACCAGAATTGGTACATGCCAACATCCGGTTTGGAGTG 1187 Query 967 AACGAGAACAGTCGCCCGAACGACTGTTCCCCGGAGCGTGTTACGACTGGGGACGAGGAA 1026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 AACGAGAACAGTCGCCCGAACGACTGTTCCCCGGAGCGTGTTACGACTGGGGACGAGGAA 1247 Query 1027 GAGATCGAATTGATAGAAATGCCAGGTTTGGCGAATACGCAAAACATGTGGGAAGACTTG 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 GAGATCGAATTGATAGAAATGCCAGGTTTGGCGAATACGCAAAACATGTGGGAAGACTTG 1307 Query 1087 TGCAATCGAATCGAGACAGCGGAAAAACCCACAAAACCCGTAGAAACGAAGAAGAGAATT 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 TGCAATCGAATCGAGACAGCGGAAAAACCCACAAAACCCGTAGAAACGAAGAAGAGAATT 1367 Query 1147 GCACCCACACCAGTGAAGAGGAAAGCGACACCGAAGAAAGCGGTCTCTTTCCGACTGCCA 1206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 GCACCCACACCAGTGAAGAGGAAAGCGACACCGAAGAAAGCGGTCTCTTTCCGACTGCCA 1427 Query 1207 AACGACAGAGAACAGCCAGCGAAAAAAAGGTAA 1239 ||||||||||||||||||||||||||||||||| Sbjct 1428 AACGACAGAGAACAGCCAGCGAAAAAAAGGTAA 1460 Lambda K H 1.33 0.621 1.13 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 124825369548 Database: Dcitri_transcriptome.fasta Posted date: Apr 30, 2019 10:57 AM Number of letters in database: 104,618,276 Number of sequences in database: 60,261 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5