BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= XM_008471854.3

Length=863
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c30103/f2p0/225isoform=c30103;full_length_coverage=2;non_full_len...  407     1e-112


>c30103/f2p0/225 isoform=c30103;full_length_coverage=2;non_full_length_coverage=0;isoform_length=225
Length=225

 Score = 407 bits (220),  Expect = 1e-112
 Identities = 223/224 (99%), Gaps = 1/224 (0%)
 Strand=Plus/Plus

Query  629  ATTGCCATCAGACCGCCGGGGATCAGGCTTCATGTATGTGCGGCGTGTATTTCGATTTTT  688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATTGCCATCAGACCGCCGGGGATCAGGCTTCATGTATGTGCGGCGTGTATTTCGATTTTT  60

Query  689  GATCCGTGACGGTGAAGTATATGTACATACGTACTGGTAGAAGGGCAGGTATTTATAACT  748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GATCCGTGACGGTGAAGTATATGTACATACGTACTGGTAGAAGGGCAGGTATTTATAACT  120

Query  749  TGCGTTTGACGGATAGTACCTCATTGTCTTTACGAAATCGCCCTGGGTGAGAAATTTCAA  808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGCGTTTGACGGATAGTACCTCATTGTCTTTACGAAATCGCCCTGGGTGAGAAATTTCAA  180

Query  809  ATAATAAAACTTGAAGCGTG-CTGAAAATTCACGTCATATTCAT  851
            |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  181  ATAATAAAACTTGAAGCGTGCCTGAAAATTCACGTCATATTCAT  224



Lambda      K        H
    1.35    0.626     1.14 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 63245115279


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5