BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= XM_008471854.3

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM010785.1.1Unknown protein. AED 0.00                             732     0.0  
DcitrM010765.1.1Unknown protein. AED 0.15                             708     0.0  


>DcitrM010785.1.1 Unknown protein. AED 0.00
Length=2221

 Score = 732 bits (396),  Expect = 0.0
 Identities = 396/396 (100%), Gaps = 0/396 (0%)
 Strand=Plus/Plus

Query  6     ATGATAACTAGAAATCTTTTATTGATATTAGTCTCCTTCATTTTGTCCACTGATGGAGTG  65
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  980   ATGATAACTAGAAATCTTTTATTGATATTAGTCTCCTTCATTTTGTCCACTGATGGAGTG  1039

Query  66    TTTGGTTCAGGTACCTCGGTACGCAACAGTACTGCTGTCCTACTGGATCTAGCTCACCTA  125
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1040  TTTGGTTCAGGTACCTCGGTACGCAACAGTACTGCTGTCCTACTGGATCTAGCTCACCTA  1099

Query  126   TGTGAGAACACTGAAGGATCTCTCAAGAACGCCTCCTGCCAAGCATTCAGCGTCACACAG  185
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1100  TGTGAGAACACTGAAGGATCTCTCAAGAACGCCTCCTGCCAAGCATTCAGCGTCACACAG  1159

Query  186   GCAACACAAGTCTGTGGCAAAGTTCGACCCAACTATCTAGGAGAAACATTCGCGAACTTT  245
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1160  GCAACACAAGTCTGTGGCAAAGTTCGACCCAACTATCTAGGAGAAACATTCGCGAACTTT  1219

Query  246   ATCAGCGTGACGCATGCGCAGTGTAACGGTCAGACATGTCATACGGTAGTCAAGACGGAT  305
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1220  ATCAGCGTGACGCATGCGCAGTGTAACGGTCAGACATGTCATACGGTAGTCAAGACGGAT  1279

Query  306   AATGATAAATTCTACGCTACGGTAGATTGCAAGACCAGTAATGGATCACCACCGTATTGT  365
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1280  AATGATAAATTCTACGCTACGGTAGATTGCAAGACCAGTAATGGATCACCACCGTATTGT  1339

Query  366   TTTTGTAACATGATCTACGGTATTATTGAGACCTGA  401
             ||||||||||||||||||||||||||||||||||||
Sbjct  1340  TTTTGTAACATGATCTACGGTATTATTGAGACCTGA  1375


>DcitrM010765.1.1 Unknown protein. AED 0.15
Length=1900

 Score = 708 bits (383),  Expect = 0.0
 Identities = 387/389 (99%), Gaps = 0/389 (0%)
 Strand=Plus/Plus

Query  11    AACTAGAAATCTTTTATTGATATTAGTCTCCTTCATTTTGTCCACTGATGGAGTGTTTGG  70
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1047  AACTAGAAATCTTTTATTGATATTAGTCTCCTTTATTTTGTCCACTGATGGAGTGTTTGG  1106

Query  71    TTCAGGTACCTCGGTACGCAACAGTACTGCTGTCCTACTGGATCTAGCTCACCTATGTGA  130
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1107  TTCAGGTACCTCGGTACGCAACAGTACTGCTGTCCTACTGGATCTAGCTCACCTATGTGA  1166

Query  131   GAACACTGAAGGATCTCTCAAGAACGCCTCCTGCCAAGCATTCAGCGTCACACAGGCAAC  190
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1167  GAACACTGAAGGATCTCTCAAGAGCGCCTCCTGCCAAGCATTCAGCGTCACACAGGCAAC  1226

Query  191   ACAAGTCTGTGGCAAAGTTCGACCCAACTATCTAGGAGAAACATTCGCGAACTTTATCAG  250
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1227  ACAAGTCTGTGGCAAAGTTCGACCCAACTATCTAGGAGAAACATTCGCGAACTTTATCAG  1286

Query  251   CGTGACGCATGCGCAGTGTAACGGTCAGACATGTCATACGGTAGTCAAGACGGATAATGA  310
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1287  CGTGACGCATGCGCAGTGTAACGGTCAGACATGTCATACGGTAGTCAAGACGGATAATGA  1346

Query  311   TAAATTCTACGCTACGGTAGATTGCAAGACCAGTAATGGATCACCACCGTATTGTTTTTG  370
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1347  TAAATTCTACGCTACGGTAGATTGCAAGACCAGTAATGGATCACCACCGTATTGTTTTTG  1406

Query  371   TAACATGATCTACGGTATTATTGAGACCT  399
             |||||||||||||||||||||||||||||
Sbjct  1407  TAACATGATCTACGGTATTATTGAGACCT  1435



Lambda      K        H
    1.34    0.623     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 18303549810


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5