BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= XM_008471854.3

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM084275.1.1Unknown protein. Similar to MCOT00021.0.CC XP_008...  665     0.0  


>DcitrM084275.1.1 Unknown protein. Similar to MCOT00021.0.CC XP_008470176.1. AED 
0.21
Length=2054

 Score = 665 bits (360),  Expect = 0.0
 Identities = 360/360 (100%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  108   GCGGAACCCAAATGTGGCCTAGTGTTTGCTGAAGGCGGCCTGACACTGGGAGGACAGATT  167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  730   GCGGAACCCAAATGTGGCCTAGTGTTTGCTGAAGGCGGCCTGACACTGGGAGGACAGATT  789

Query  168   AAAGACAAAGTGAAAACCAAATGCACAACCGAAGGACCCGCATGTCCGGAAAAATGCGAC  227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  790   AAAGACAAAGTGAAAACCAAATGCACAACCGAAGGACCCGCATGTCCGGAAAAATGCGAC  849

Query  228   AAGGACCTTCTCACAGAAATCAACACACTTTGCGAGGCAAACTTCACCGCTCACTGTCAG  287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  850   AAGGACCTTCTCACAGAAATCAACACACTTTGCGAGGCAAACTTCACCGCTCACTGTCAG  909

Query  288   GACACGTGTGAAATGTCTCTGCCAACTGTTGACGAAAATGAAGAGAGGAAATCATTCAAC  347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  910   GACACGTGTGAAATGTCTCTGCCAACTGTTGACGAAAATGAAGAGAGGAAATCATTCAAC  969

Query  348   GGCTGCTGTGTCGTTCTGGGCAAGAACTTTGAGGGGGACTTCAACGTCTACACTTTTGCT  407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  970   GGCTGCTGTGTCGTTCTGGGCAAGAACTTTGAGGGGGACTTCAACGTCTACACTTTTGCT  1029

Query  408   GATGATACGGATGGCATTAAGTTGATCAGCTTTGGAGGCAGTGCTGCTAGTACACCCTAA  467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1030  GATGATACGGATGGCATTAAGTTGATCAGCTTTGGAGGCAGTGCTGCTAGTACACCCTAA  1089


 Score = 182 bits (98),  Expect = 3e-45
 Identities = 100/101 (99%), Gaps = 0/101 (0%)
 Strand=Plus/Plus

Query  6    ATGAATACAGTGCAACATTTAATAGATCATAAAATTTCAACCCTTGCTCTAAATGAGAAA  65
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  524  ATGAATACAGTGCAACATTTAATAGATCATAAAATTTCAACCCTTGCTCTAAATGAGAAA  583

Query  66   CTTGAAATAAAAAGGCCGGGGAGACCAACAATGGAATCATA  106
            |||||||||||||||| ||||||||||||||||||||||||
Sbjct  584  CTTGAAATAAAAAGGCTGGGGAGACCAACAATGGAATCATA  624



Lambda      K        H
    1.34    0.623     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 21507884790


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5