BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= 05681

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c307139/f3p8/3640isoform=c307139;full_length_coverage=3;non_full_...  279     9e-75
c259290/f2p3/3629isoform=c259290;full_length_coverage=2;non_full_...  279     9e-75
c140686/f6p4/1372isoform=c140686;full_length_coverage=6;non_full_...  279     9e-75
c99315/f2p2/1360isoform=c99315;full_length_coverage=2;non_full_le...  279     9e-75
c341124/f2p7/3634isoform=c341124;full_length_coverage=2;non_full_...  279     9e-75


>c307139/f3p8/3640 isoform=c307139;full_length_coverage=3;non_full_length_coverage=8;isoform_length=3640
Length=3640

 Score = 279 bits (151),  Expect = 9e-75
 Identities = 151/151 (100%), Gaps = 0/151 (0%)
 Strand=Plus/Minus

Query  1    ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  293

Query  61   GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  233

Query  121  ACACACTTTTCAATAACTAGCTTGAGAACAC  151
            |||||||||||||||||||||||||||||||
Sbjct  232  ACACACTTTTCAATAACTAGCTTGAGAACAC  202


>c259290/f2p3/3629 isoform=c259290;full_length_coverage=2;non_full_length_coverage=3;isoform_length=3629
Length=3629

 Score = 279 bits (151),  Expect = 9e-75
 Identities = 151/151 (100%), Gaps = 0/151 (0%)
 Strand=Plus/Minus

Query  1    ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  279

Query  61   GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  219

Query  121  ACACACTTTTCAATAACTAGCTTGAGAACAC  151
            |||||||||||||||||||||||||||||||
Sbjct  218  ACACACTTTTCAATAACTAGCTTGAGAACAC  188


>c140686/f6p4/1372 isoform=c140686;full_length_coverage=6;non_full_length_coverage=4;isoform_length=1372
Length=1372

 Score = 279 bits (151),  Expect = 9e-75
 Identities = 151/151 (100%), Gaps = 0/151 (0%)
 Strand=Plus/Minus

Query  1    ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  313  ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  254

Query  61   GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  194

Query  121  ACACACTTTTCAATAACTAGCTTGAGAACAC  151
            |||||||||||||||||||||||||||||||
Sbjct  193  ACACACTTTTCAATAACTAGCTTGAGAACAC  163


>c99315/f2p2/1360 isoform=c99315;full_length_coverage=2;non_full_length_coverage=2;isoform_length=1360
Length=1360

 Score = 279 bits (151),  Expect = 9e-75
 Identities = 151/151 (100%), Gaps = 0/151 (0%)
 Strand=Plus/Minus

Query  1    ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310  ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  251

Query  61   GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  250  GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  191

Query  121  ACACACTTTTCAATAACTAGCTTGAGAACAC  151
            |||||||||||||||||||||||||||||||
Sbjct  190  ACACACTTTTCAATAACTAGCTTGAGAACAC  160


>c341124/f2p7/3634 isoform=c341124;full_length_coverage=2;non_full_length_coverage=7;isoform_length=3634
Length=3634

 Score = 279 bits (151),  Expect = 9e-75
 Identities = 151/151 (100%), Gaps = 0/151 (0%)
 Strand=Plus/Minus

Query  1    ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  315  ATGCATGTGGGAAAAGCAATGCCTTTTTTCATGTCCTTGATTTTCTTGAAACATTTGCTT  256

Query  61   GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  GTCTCGTCAAATAACAACTGGTCACTAAATTCACAGATATCTTTAGCAGATGCATTTTCA  196

Query  121  ACACACTTTTCAATAACTAGCTTGAGAACAC  151
            |||||||||||||||||||||||||||||||
Sbjct  195  ACACACTTTTCAATAACTAGCTTGAGAACAC  165



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 17247287772


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5