BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Diaci_v3.0.ref.fa
           14 sequences; 476,518,215 total letters



Query= 77728

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DC3.0sc03                                                             331     3e-89


>DC3.0sc03 
Length=46621296

 Score = 331 bits (179),  Expect = 3e-89
 Identities = 181/182 (99%), Gaps = 0/182 (0%)
 Strand=Plus/Plus

Query  248       AGGCATTTGGTTTCATGACAAGAACTGCACTCTTGGCTGAAAAAATGGATCATCATCCAA  307
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  28442846  AGGCATTTGGTTTCATGACAAGAACTGCACTCTTGGCTGAAAAAATGGATCATCATCCAG  28442905

Query  308       AATGGTTCAATGTTTACAACAAAGTTCAAGTTACTCTAAGCACTCATGATTGTAATGGTC  367
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28442906  AATGGTTCAATGTTTACAACAAAGTTCAAGTTACTCTAAGCACTCATGATTGTAATGGTC  28442965

Query  368       TCAGCAATAAAGATATCAAACTTGCCTCATTCATGGATACAATAATCAAAGCTGAATCTT  427
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28442966  TCAGCAATAAAGATATCAAACTTGCCTCATTCATGGATACAATAATCAAAGCTGAATCTT  28443025

Query  428       AA  429
                 ||
Sbjct  28443026  AA  28443027


 Score = 326 bits (176),  Expect = 1e-87
 Identities = 180/182 (99%), Gaps = 0/182 (0%)
 Strand=Plus/Plus

Query  248       AGGCATTTGGTTTCATGACAAGAACTGCACTCTTGGCTGAAAAAATGGATCATCATCCAA  307
                 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  28460302  AGGCATTTGGTTTCATGACAAGAACTGCCCTCTTGGCTGAAAAAATGGATCATCATCCAG  28460361

Query  308       AATGGTTCAATGTTTACAACAAAGTTCAAGTTACTCTAAGCACTCATGATTGTAATGGTC  367
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28460362  AATGGTTCAATGTTTACAACAAAGTTCAAGTTACTCTAAGCACTCATGATTGTAATGGTC  28460421

Query  368       TCAGCAATAAAGATATCAAACTTGCCTCATTCATGGATACAATAATCAAAGCTGAATCTT  427
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28460422  TCAGCAATAAAGATATCAAACTTGCCTCATTCATGGATACAATAATCAAAGCTGAATCTT  28460481

Query  428       AA  429
                 ||
Sbjct  28460482  AA  28460483


 Score = 237 bits (128),  Expect = 6e-61
 Identities = 128/128 (100%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  123       GGCATCTGTAAAGCTGTCTGCTGATGAAAGACTGAGTAAACTTGAACCCATTTTGAAATC  182
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28442569  GGCATCTGTAAAGCTGTCTGCTGATGAAAGACTGAGTAAACTTGAACCCATTTTGAAATC  28442628

Query  183       AGGATGGAAATTGGTTGAGAACAGGGATGCTATTTATAAAGAATACCTTTTCAAGAATTT  242
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28442629  AGGATGGAAATTGGTTGAGAACAGGGATGCTATTTATAAAGAATACCTTTTCAAGAATTT  28442688

Query  243       CAATGAGG  250
                 ||||||||
Sbjct  28442689  CAATGAGG  28442696


 Score = 237 bits (128),  Expect = 6e-61
 Identities = 128/128 (100%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  123       GGCATCTGTAAAGCTGTCTGCTGATGAAAGACTGAGTAAACTTGAACCCATTTTGAAATC  182
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28460025  GGCATCTGTAAAGCTGTCTGCTGATGAAAGACTGAGTAAACTTGAACCCATTTTGAAATC  28460084

Query  183       AGGATGGAAATTGGTTGAGAACAGGGATGCTATTTATAAAGAATACCTTTTCAAGAATTT  242
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28460085  AGGATGGAAATTGGTTGAGAACAGGGATGCTATTTATAAAGAATACCTTTTCAAGAATTT  28460144

Query  243       CAATGAGG  250
                 ||||||||
Sbjct  28460145  CAATGAGG  28460152


 Score = 230 bits (124),  Expect = 1e-58
 Identities = 124/124 (100%), Gaps = 0/124 (0%)
 Strand=Plus/Plus

Query  1         ATGTTCACTGGAGCTAGGAGTGGAATTCAGTCTAAGAAGTTCCTTCTCCCTGTTTGCTTT  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28441630  ATGTTCACTGGAGCTAGGAGTGGAATTCAGTCTAAGAAGTTCCTTCTCCCTGTTTGCTTT  28441689

Query  61        TCACTGCTTCTCAATAGCAATTCTGTTTCTGCTGCTTCAACAAGCAAATCTCTCAAGAGA  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28441690  TCACTGCTTCTCAATAGCAATTCTGTTTCTGCTGCTTCAACAAGCAAATCTCTCAAGAGA  28441749

Query  121       ATGG  124
                 ||||
Sbjct  28441750  ATGG  28441753


 Score = 230 bits (124),  Expect = 1e-58
 Identities = 124/124 (100%), Gaps = 0/124 (0%)
 Strand=Plus/Plus

Query  1         ATGTTCACTGGAGCTAGGAGTGGAATTCAGTCTAAGAAGTTCCTTCTCCCTGTTTGCTTT  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28459399  ATGTTCACTGGAGCTAGGAGTGGAATTCAGTCTAAGAAGTTCCTTCTCCCTGTTTGCTTT  28459458

Query  61        TCACTGCTTCTCAATAGCAATTCTGTTTCTGCTGCTTCAACAAGCAAATCTCTCAAGAGA  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28459459  TCACTGCTTCTCAATAGCAATTCTGTTTCTGCTGCTTCAACAAGCAAATCTCTCAAGAGA  28459518

Query  121       ATGG  124
                 ||||
Sbjct  28459519  ATGG  28459522



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 191560170474


  Database: Diaci_v3.0.ref.fa
    Posted date:  May 28, 2019  1:32 PM
  Number of letters in database: 476,518,215
  Number of sequences in database:  14



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5