BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Diaci_v2.0.alt.fasta
           1,751 sequences; 79,163,960 total letters



Query= 77728

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ScVcwli_1475                                                          239     3e-62


>ScVcwli_1475 
Length=19926

 Score = 239 bits (129),  Expect = 3e-62
 Identities = 168/184 (91%), Gaps = 13/184 (7%)
 Strand=Plus/Plus

Query  248    AGGCATTTGGTTTCATGACAAGAACTGCACTCTTGGCTG-AAAAAATGGATCATCATCCA  306
              |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct  18940  AGGCATTTGGTTTCATGACAAGAACTGCCCTCTTGGCTGAAAAAAATGGATCATCATCCA  18999

Query  307    AAATGGTTCAATGTTTACAACAAAGTTCAAGTTACT-CTAAGCACTCATGAT-TGTAATG  364
               |||||| ||||||||| ||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct  19000  GAATGGT-CAATGTTTA-AACAAAGTTCA-GTTACTACTAAGCA-TCATGATATGTAATG  19055

Query  365    GTCTCAGCAATAAAGATATCAAACTTGCCTCATTCATGGATACAATAATCAAAGCTGAAT  424
              ||||||||||||| ||| ||  ||||||||||||||| |||||||||||||| ||||| |
Sbjct  19056  GTCTCAGCAATAA-GAT-TC--ACTTGCCTCATTCATTGATACAATAATCAA-GCTGA-T  19109

Query  425    CTTA  428
              ||||
Sbjct  19110  CTTA  19113


 Score = 237 bits (128),  Expect = 1e-61
 Identities = 128/128 (100%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  123    GGCATCTGTAAAGCTGTCTGCTGATGAAAGACTGAGTAAACTTGAACCCATTTTGAAATC  182
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18663  GGCATCTGTAAAGCTGTCTGCTGATGAAAGACTGAGTAAACTTGAACCCATTTTGAAATC  18722

Query  183    AGGATGGAAATTGGTTGAGAACAGGGATGCTATTTATAAAGAATACCTTTTCAAGAATTT  242
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18723  AGGATGGAAATTGGTTGAGAACAGGGATGCTATTTATAAAGAATACCTTTTCAAGAATTT  18782

Query  243    CAATGAGG  250
              ||||||||
Sbjct  18783  CAATGAGG  18790


 Score = 230 bits (124),  Expect = 2e-59
 Identities = 124/124 (100%), Gaps = 0/124 (0%)
 Strand=Plus/Plus

Query  1      ATGTTCACTGGAGCTAGGAGTGGAATTCAGTCTAAGAAGTTCCTTCTCCCTGTTTGCTTT  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18038  ATGTTCACTGGAGCTAGGAGTGGAATTCAGTCTAAGAAGTTCCTTCTCCCTGTTTGCTTT  18097

Query  61     TCACTGCTTCTCAATAGCAATTCTGTTTCTGCTGCTTCAACAAGCAAATCTCTCAAGAGA  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18098  TCACTGCTTCTCAATAGCAATTCTGTTTCTGCTGCTTCAACAAGCAAATCTCTCAAGAGA  18157

Query  121    ATGG  124
              ||||
Sbjct  18158  ATGG  18161



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 31964554740


  Database: Diaci_v2.0.alt.fasta
    Posted date:  May 28, 2019  3:05 PM
  Number of letters in database: 79,163,960
  Number of sequences in database:  1,751



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5