BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= 05681

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM021900.1.1Unknown protein. Similar to MCOT04055.0.CO. AED 0.00  693     0.0  


>DcitrM021900.1.1 Unknown protein. Similar to MCOT04055.0.CO. AED 0.00
Length=686

 Score = 693 bits (375),  Expect = 0.0
 Identities = 403/417 (97%), Gaps = 0/417 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGATCGGTAGCTGTGAGATTCTCGCTTTTACTCTCGCTATGGTACGATATATGGGT  60
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  188  ATGAAGATCGGTAGCTGTGAGATCCTCACTTTTACTCTCGCTATGGTACGATATATGGGT  247

Query  61   CCGGCTTTGTTTATGCTGGGCAGTGTGTTAGTATCAGAAACATATGCCAACGAAACCATC  120
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  248  CCGGCTTTGTTTATGCTGGGCAGTGTGTTAGTACCAGAAACATATGCCAACGAAACCATC  307

Query  121  GAGTACGCCTATTCCACGAACGAGGACTTCGCCAACATGTCGGTCTGCCAGACCGAAAAC  180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  308  GAGTACGCCTATTCCACGAACGAGGACTTTGCCAACATGTCGGTCTGCCAGACCGAAAAC  367

Query  181  ACCACCAGCTGTCAAACCTTCCCCCTGGAGAAGGCCAAGTTTGTTTGCAATGATACATAC  240
            | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  368  ATCACCAGCTGTCAAACCTTCCCCCTGGAGAAGGCCAAGTTTGTTTGCGATGATACATAC  427

Query  241  AATGTGACCCAACTGGTTAACGCCACATGTGGAGTGAAAACCCAACTGGGCGAAGAGAAA  300
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  AATGTGACCAAACTGGTTAACGCCACATGTGGAGTGAAAACCCAACTGGGCGAAGAGAAA  487

Query  301  AAGACGTGTACGGTGTTTTGTGAGATGACCACTCCGTATTTGAGCTACATGGACTGCTGG  360
            |||||||| ||||||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct  488  AAGACGTGCACGGTGTTTTGCGAGATGACCACCCCGTATTTGAGCTTCATCGACTGCTGG  547

Query  361  GATGGTGGAAACAACACAGTCACCTGTATTTGCTATGTTTACAAGGTGAAAAAGTAG  417
            ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  548  GATGGTGGAAACAACACGGTTACCTGTATTTGCTATGTTTACAAGGTGAAAAAGTAG  604



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 19080358290


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5