BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= XM_008471854.3

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c66772/f2p0/999isoform=c66772;full_length_coverage=2;non_full_len...  832     0.0  


>c66772/f2p0/999 isoform=c66772;full_length_coverage=2;non_full_length_coverage=0;isoform_length=999
Length=999

 Score = 832 bits (450),  Expect = 0.0
 Identities = 450/450 (100%), Gaps = 0/450 (0%)
 Strand=Plus/Plus

Query  6    ATGGATGGACGGCAGTTTCTTGTTATGGCCATTTTAACTCTCTTCTCATTGGTGGACGAG  65
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  116  ATGGATGGACGGCAGTTTCTTGTTATGGCCATTTTAACTCTCTTCTCATTGGTGGACGAG  175

Query  66   TCCAGGTCACAGCAACCCCCGCCCAGCGAGGCCACTAATCTCGCCAAGGCTAAGCTGTGC  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  TCCAGGTCACAGCAACCCCCGCCCAGCGAGGCCACTAATCTCGCCAAGGCTAAGCTGTGC  235

Query  126  ATACCCGGTAACGAGCAATCTATTAATCATTGTAAGAATGCCCTGTCTGCAGAGGTGACG  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  ATACCCGGTAACGAGCAATCTATTAATCATTGTAAGAATGCCCTGTCTGCAGAGGTGACG  295

Query  186  GCCCATTTCCATCCGGAGAAGAAGTTAACCATTCTGACGTCGTCCTGTGTCTATGTGTCC  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  GCCCATTTCCATCCGGAGAAGAAGTTAACCATTCTGACGTCGTCCTGTGTCTATGTGTCC  355

Query  246  AATGGTCCTCCAGTCAAGGGCGCCAATGGTCAGCCCACCAGTCCCATCCGCTGTAGCATG  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  AATGGTCCTCCAGTCAAGGGCGCCAATGGTCAGCCCACCAGTCCCATCCGCTGTAGCATG  415

Query  306  CATGGTTACAGCTTACCCAATCCTGATGAACAGGAGGACCTGGTCACTCTTCACTTCTTC  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  CATGGTTACAGCTTACCCAATCCTGATGAACAGGAGGACCTGGTCACTCTTCACTTCTTC  475

Query  366  AATGATAACAAGGCTCCAGGAGATGGCATCCTGGTGGAAGCGTACTTTGGAGACGATAAA  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  476  AATGATAACAAGGCTCCAGGAGATGGCATCCTGGTGGAAGCGTACTTTGGAGACGATAAA  535

Query  426  CAGCCCAAACTTACCGAGACTCCTCTCTAA  455
            ||||||||||||||||||||||||||||||
Sbjct  536  CAGCCCAAACTTACCGAGACTCCTCTCTAA  565


 Score = 89.8 bits (48),  Expect = 3e-17
 Identities = 65/73 (89%), Gaps = 2/73 (3%)
 Strand=Plus/Plus

Query  385  GAGATGGCATCCTGGTGGAAGCGTACTTTGGAGACGATAAACAGCC--CAAACTTACCGA  442
            ||||||||||||  |||||||| |||||||||||||||||||| ||  |||||||||| |
Sbjct  706  GAGATGGCATCCCAGTGGAAGCCTACTTTGGAGACGATAAACAACCCACAAACTTACCAA  765

Query  443  GACTCCTCTCTAA  455
            ||||||| |||||
Sbjct  766  GACTCCTTTCTAA  778



Lambda      K        H
    1.34    0.623     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 32509648190


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5