BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_rna.fa 25,292 sequences; 49,157,538 total letters Query= XM_008471854.3 Length=404 Score E Sequences producing significant alignments: (Bits) Value DcitrM010785.1.1Unknown protein. AED 0.00 737 0.0 DcitrM010765.1.1Unknown protein. AED 0.15 715 0.0 DcitrM010770.1.1Unknown protein. Similar to XP_008470076.1. AED 0.14 614 2e-175 >DcitrM010785.1.1 Unknown protein. AED 0.00 Length=2221 Score = 737 bits (399), Expect = 0.0 Identities = 399/399 (100%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 6 ATGGCTCCTGATATTCTTTTCCCATGGTTTCCTGTGTTTATTTCAGTGTTCTTTCTTATT 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 ATGGCTCCTGATATTCTTTTCCCATGGTTTCCTGTGTTTATTTCAGTGTTCTTTCTTATT 229 Query 66 GGCACAGCGCATGCGCAGGGCATACTCCTGCATAACGTCACGAAGCCTGTGGGTGGTTTG 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 GGCACAGCGCATGCGCAGGGCATACTCCTGCATAACGTCACGAAGCCTGTGGGTGGTTTG 289 Query 126 CCGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCACGGCTTTCACC 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 CCGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCACGGCTTTCACC 349 Query 186 GTAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAATCGCACTCCGGACAAAAGTAC 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 GTAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAATCGCACTCCGGACAAAAGTAC 409 Query 246 TACACGCGCTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATGTAGAT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 TACACGCGCTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATGTAGAT 469 Query 306 GTGGCTACGGATGCAGAGAGTTTGCGCGCTGTTGTAGATTGCCATCAGACCGCCGGGGAT 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 GTGGCTACGGATGCAGAGAGTTTGCGCGCTGTTGTAGATTGCCATCAGACCGCCGGGGAT 529 Query 366 CAGGCGTCATGTATGTGCGGCGTGTATTTCGATTTTTGA 404 ||||||||||||||||||||||||||||||||||||||| Sbjct 530 CAGGCGTCATGTATGTGCGGCGTGTATTTCGATTTTTGA 568 >DcitrM010765.1.1 Unknown protein. AED 0.15 Length=1900 Score = 715 bits (387), Expect = 0.0 Identities = 395/399 (99%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 6 ATGGCTCCTGATATTCTTTTCCCATGGTTTCCTGTGTTTATTTCAGTGTTCTTTCTTATT 65 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 224 ATGGCTCCTGATATTCTTTTCCCATGGTGTCCTGTGTTTATTTCAGTGTTCTTTCTTATT 283 Query 66 GGCACAGCGCATGCGCAGGGCATACTCCTGCATAACGTCACGAAGCCTGTGGGTGGTTTG 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 GGCACAGCGCATGCGCAGGGCATACTCCTGCATAACGTCACGAAGCCTGTGGGTGGTTTG 343 Query 126 CCGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCACGGCTTTCACC 185 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 344 CCGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCACTGCTTTCACC 403 Query 186 GTAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAATCGCACTCCGGACAAAAGTAC 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 404 GTAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAATCGCACTCCGGACAAAAGTAC 463 Query 246 TACACGCGCTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATGTAGAT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 TACACGCGCTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATGTAGAT 523 Query 306 GTGGCTACGGATGCAGAGAGTTTGCGCGCTGTTGTAGATTGCCATCAGACCGCCGGGGAT 365 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 GTGGCTACAGATGCAGAGAGTTTGCGCGCTGTTGTAGATTGCCATCAGACCGCCGGGGAT 583 Query 366 CAGGCGTCATGTATGTGCGGCGTGTATTTCGATTTTTGA 404 ||||| ||||||||||||||||||||||||||||||||| Sbjct 584 CAGGCTTCATGTATGTGCGGCGTGTATTTCGATTTTTGA 622 >DcitrM010770.1.1 Unknown protein. Similar to XP_008470076.1. AED 0.14 Length=1078 Score = 614 bits (332), Expect = 2e-175 Identities = 358/371 (96%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 6 ATGGCTCCTGATATTCTTTTCCCATGGTTTCCTGTGTTTATTTCAGTGTTCTTTCTTATT 65 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 175 ATGGCTCCTGATATTCTTTCCCCATGGTGTCCTGTGTTTATTTCAGTGTTCTTTCTTATT 234 Query 66 GGCACAGCGCATGCGCAGGGCATACTCCTGCATAACGTCACGAAGCCTGTGGGTGGTTTG 125 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 235 GGCACAGCGCATGCGCAGGGCACACTCCTGCATAACGTCACGAAGCCTGTGGGCGGTTTG 294 Query 126 CCGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCACGGCTTTCACC 185 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 295 CCGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCAGGGCTTTCACC 354 Query 186 GTAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAATCGCACTCCGGACAAAAGTAC 245 ||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||| Sbjct 355 GTAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAACCGTACTTCGGACTAAAGTAC 414 Query 246 TACACGCGCTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATGTAGAT 305 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 415 TACACGCGTTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATATAGAT 474 Query 306 GTGGCTACGGATGCAGAGAGTTTGCGCGCTGTTGTAGATTGCCATCAGACCGCCGGGGAT 365 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 475 GTGGCTACGGATGCAGAGAGTTTCCGCGCTGTTGTAGATTGCCGTCAGACCGCCGGGGAT 534 Query 366 CAGGCGTCATG 376 ||||||||||| Sbjct 535 CAGGCGTCATG 545 Score = 518 bits (280), Expect = 2e-146 Identities = 314/330 (95%), Gaps = 3/330 (1%) Strand=Plus/Plus Query 67 GCACAGCGCATGCGCAGGGCATACTCCTGCATAACGTCACGAAGCCTGTGGGTGGTTTGC 126 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 545 GCACAGCGCATGCGCAGGGCACACTCCTGCATAACGTCACGAAGCCTGTGGGCGGTTTGC 604 Query 127 CGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCACGGCTTTCACCG 186 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 605 CGAATCTCTGCGCGCCGCGCGCCGGAGATGTAGACACTGCGTCATGCAGGGCTTTCACCG 664 Query 187 TAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAATCGCACTCCGGACAAAAGTACT 246 |||||||||||||||||||||||||||||||||||||| || ||| ||||| || ||| Sbjct 665 TAGCACAAGCAACATCCTCCTGCGGCTTAGATGTAAAACCGTACTTCGGACTAA---ACT 721 Query 247 ACACGCGCTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATGTAGATG 306 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 722 ACACGCGTTACACGCAAATCAAACATGTACAATGTAATGGACAGACATGTCATATAGATG 781 Query 307 TGGCTACGGATGCAGAGAGTTTGCGCGCTGTTGTAGATTGCCATCAGACCGCCGGGGATC 366 |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 782 TGGCTACGGATGCAGAGAGTTTCCGCGCTGTTGTAGATTGCCGTCAGACCGCCGGGGATC 841 Query 367 AGGCGTCATGTATGTGCGGCGTGTATTTCG 396 ||||||||||| ||||||| |||||||||| Sbjct 842 AGGCGTCATGTGTGTGCGGTGTGTATTTCG 871 Lambda K H 1.34 0.623 1.13 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18449201400 Database: Dcitr_OGSv2.0_rna.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 49,157,538 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5