BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= 05681

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM044565.1.1Unknown protein. AED 0.00                             416     4e-116


>DcitrM044565.1.1 Unknown protein. AED 0.00
Length=578

 Score = 416 bits (225),  Expect = 4e-116
 Identities = 225/225 (100%), Gaps = 0/225 (0%)
 Strand=Plus/Plus

Query  1    ATGCTCTGGAAACAAATGCTTGGATCTGTGTTTCAAGTTCGAACTTTGATCAAAGTCTTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  ATGCTCTGGAAACAAATGCTTGGATCTGTGTTTCAAGTTCGAACTTTGATCAAAGTCTTG  275

Query  61   ATCCTTCTGTTCGCTATCAAACAAATTGAGAGCGTCTGGGACAGTTCTCAGACGGACGTC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  276  ATCCTTCTGTTCGCTATCAAACAAATTGAGAGCGTCTGGGACAGTTCTCAGACGGACGTC  335

Query  121  ACAGGCGAACATAATTCTTATACCAACATGGACACTTCCAAACCCATAAAAGAGCGAAAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336  ACAGGCGAACATAATTCTTATACCAACATGGACACTTCCAAACCCATAAAAGAGCGAAAA  395

Query  181  ACCCTCAAAAAAGAATTCAACGGGAGTATATCTGCATCTATATAA  225
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  396  ACCCTCAAAAAAGAATTCAACGGGAGTATATCTGCATCTATATAA  440



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 9758656530


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5