BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Diaci_v3.0.ref.fa
           14 sequences; 476,518,215 total letters



Query= Untitled_sequence

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DC3.0sc05                                                             239     2e-61


>DC3.0sc05 
Length=40831495

 Score = 239 bits (129),  Expect = 2e-61
 Identities = 129/129 (100%), Gaps = 0/129 (0%)
 Strand=Plus/Minus

Query  1         ATGGCCGAACCCAAGGAAAGAACTTTTCTCATGATCAAGCCCGATGGCGTTCAAAGAGGA  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10004362  ATGGCCGAACCCAAGGAAAGAACTTTTCTCATGATCAAGCCCGATGGCGTTCAAAGAGGA  10004303

Query  61        CTTGTGGGAAACATCATCAAACGCTTTGAAGACAAAGGCTTCAAATTGGTGGCCATGAAA  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10004302  CTTGTGGGAAACATCATCAAACGCTTTGAAGACAAAGGCTTCAAATTGGTGGCCATGAAA  10004243

Query  121       TTCGTTTGG  129
                 |||||||||
Sbjct  10004242  TTCGTTTGG  10004234


 Score = 239 bits (129),  Expect = 2e-61
 Identities = 129/129 (100%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  1         ATGGCCGAACCCAAGGAAAGAACTTTTCTCATGATCAAGCCCGATGGCGTTCAAAGAGGA  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10134207  ATGGCCGAACCCAAGGAAAGAACTTTTCTCATGATCAAGCCCGATGGCGTTCAAAGAGGA  10134266

Query  61        CTTGTGGGAAACATCATCAAACGCTTTGAAGACAAAGGCTTCAAATTGGTGGCCATGAAA  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10134267  CTTGTGGGAAACATCATCAAACGCTTTGAAGACAAAGGCTTCAAATTGGTGGCCATGAAA  10134326

Query  121       TTCGTTTGG  129
                 |||||||||
Sbjct  10134327  TTCGTTTGG  10134335


 Score = 222 bits (120),  Expect = 2e-56
 Identities = 120/120 (100%), Gaps = 0/120 (0%)
 Strand=Plus/Plus

Query  343       AGAAACATCATGCATGGATCAGACTCTGTTGAATCTGCAAAGAAAGAAATTGCCTTATGG  402
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10135469  AGAAACATCATGCATGGATCAGACTCTGTTGAATCTGCAAAGAAAGAAATTGCCTTATGG  10135528

Query  403       TTCACTGAGAAAGAAGTCATTGGATGGACAAATGCCAGTGAATCCTGGATCTATGAATAA  462
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10135529  TTCACTGAGAAAGAAGTCATTGGATGGACAAATGCCAGTGAATCCTGGATCTATGAATAA  10135588


 Score = 211 bits (114),  Expect = 4e-53
 Identities = 118/120 (98%), Gaps = 0/120 (0%)
 Strand=Plus/Minus

Query  343       AGAAACATCATGCATGGATCAGACTCTGTTGAATCTGCAAAGAAAGAAATTGCCTTATGG  402
                 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10003077  AGAAACATTATGCATGGATCAGACTCTGTTGAATCTGCAAAGAAAGAAATTGCCTTATGG  10003018

Query  403       TTCACTGAGAAAGAAGTCATTGGATGGACAAATGCCAGTGAATCCTGGATCTATGAATAA  462
                 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  10003017  TTCACTGAGAAAGAAGTCATTGGATGGACAAATGCCAGTGAATCTTGGATCTATGAATAA  10002958


 Score = 211 bits (114),  Expect = 4e-53
 Identities = 114/114 (100%), Gaps = 0/114 (0%)
 Strand=Plus/Minus

Query  231       GGTGTGGGAAGGATTGAACATTGTCAAAACTGGACGTGTGATGCTTGGAGCCACCAACCC  290
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10003368  GGTGTGGGAAGGATTGAACATTGTCAAAACTGGACGTGTGATGCTTGGAGCCACCAACCC  10003309

Query  291       TGCTGACTCTGCCCCAGGAACTGTCAGAGGAGACCTCTGCATCCAAGTTGGAAG  344
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10003308  TGCTGACTCTGCCCCAGGAACTGTCAGAGGAGACCTCTGCATCCAAGTTGGAAG  10003255


 Score = 211 bits (114),  Expect = 4e-53
 Identities = 114/114 (100%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  231       GGTGTGGGAAGGATTGAACATTGTCAAAACTGGACGTGTGATGCTTGGAGCCACCAACCC  290
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10135188  GGTGTGGGAAGGATTGAACATTGTCAAAACTGGACGTGTGATGCTTGGAGCCACCAACCC  10135247

Query  291       TGCTGACTCTGCCCCAGGAACTGTCAGAGGAGACCTCTGCATCCAAGTTGGAAG  344
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10135248  TGCTGACTCTGCCCCAGGAACTGTCAGAGGAGACCTCTGCATCCAAGTTGGAAG  10135301


 Score = 195 bits (105),  Expect = 4e-48
 Identities = 105/105 (100%), Gaps = 0/105 (0%)
 Strand=Plus/Minus

Query  129       GCCATCCGAAGAACTTCTGAAGCAACACTACTCAGATTTGGCCACCAAACCTTTCTTCCC  188
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10003881  GCCATCCGAAGAACTTCTGAAGCAACACTACTCAGATTTGGCCACCAAACCTTTCTTCCC  10003822

Query  189       TGGTCTTGTCAAATACATGTCATCTGGACCTGTTGTTCCTATGGT  233
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10003821  TGGTCTTGTCAAATACATGTCATCTGGACCTGTTGTTCCTATGGT  10003777


 Score = 195 bits (105),  Expect = 4e-48
 Identities = 105/105 (100%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  129       GCCATCCGAAGAACTTCTGAAGCAACACTACTCAGATTTGGCCACCAAACCTTTCTTCCC  188
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10134688  GCCATCCGAAGAACTTCTGAAGCAACACTACTCAGATTTGGCCACCAAACCTTTCTTCCC  10134747

Query  189       TGGTCTTGTCAAATACATGTCATCTGGACCTGTTGTTCCTATGGT  233
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10134748  TGGTCTTGTCAAATACATGTCATCTGGACCTGTTGTTCCTATGGT  10134792



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 207285259095


  Database: Diaci_v3.0.ref.fa
    Posted date:  May 28, 2019  1:32 PM
  Number of letters in database: 476,518,215
  Number of sequences in database:  14



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5