BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: SS_all_quivered_hq.fasta 42,166 sequences; 76,657,983 total letters Query= XM_017447740.1 Length=333 Score E Sequences producing significant alignments: (Bits) Value c259420/f3p3/2228isoform=c259420;full_length_coverage=3;non_full_... 329 1e-89 c229748/f3p21/2079isoform=c229748;full_length_coverage=3;non_full... 329 1e-89 c228642/f15p20/2116isoform=c228642;full_length_coverage=15;non_fu... 329 1e-89 c236798/f2p21/1981isoform=c236798;full_length_coverage=2;non_full... 322 2e-87 >c259420/f3p3/2228 isoform=c259420;full_length_coverage=3;non_full_length_coverage=3;isoform_length=2228 Length=2228 Score = 329 bits (178), Expect = 1e-89 Identities = 180/181 (99%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 8 AGGTGGCCAAGGTAGCCCAGGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 67 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1354 AGGTGGCCAAGGTAGCCCAAGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 1413 Query 68 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1414 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 1473 Query 128 ATAAGTTCACCGATGAGGAAGCTGTTAAAAATGCGGTGAAGTCGTGGTACGATGAGATCA 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1474 ATAAGTTCACCGATGAGGAAGCTGTTAAAAATGCGGTGAAGTCGTGGTACGATGAGATCA 1533 Query 188 G 188 | Sbjct 1534 G 1534 Score = 250 bits (135), Expect = 1e-65 Identities = 141/144 (98%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 188 GACATTTCACTCAAGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 247 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1591 GACATTTCACTCAGGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 1650 Query 248 AGAACGGGCACATCTTGGTGGTAGCCAACTATGATCCTCCGGGCAACTACCAGGGGCAAT 307 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1651 AGAACGGGCACATCTTGGTGGTAGCCAATTATGATCCACCGGGCAACTACCAGGGGCAAT 1710 Query 308 ACGCCAATAATGTGAGAAGATCTT 331 |||||||||||||||||||||||| Sbjct 1711 ACGCCAATAATGTGAGAAGATCTT 1734 >c229748/f3p21/2079 isoform=c229748;full_length_coverage=3;non_full_length_coverage=21;isoform_length=2079 Length=2079 Score = 329 bits (178), Expect = 1e-89 Identities = 180/181 (99%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 8 AGGTGGCCAAGGTAGCCCAGGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 AGGTGGCCAAGGTAGCCCAGGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 1257 Query 68 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 1317 Query 128 ATAAGTTCACCGATGAGGAAGCTGTTAAAAATGCGGTGAAGTCGTGGTACGATGAGATCA 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1318 ATAAGTTCACCGATGAGGAAGCTGTTAAACATGCGGTGAAGTCGTGGTACGATGAGATCA 1377 Query 188 G 188 | Sbjct 1378 G 1378 Score = 259 bits (140), Expect = 2e-68 Identities = 144/146 (99%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 188 GACATTTCACTCAAGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 247 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 GACATTTCACTCAGGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 1494 Query 248 AGAACGGGCACATCTTGGTGGTAGCCAACTATGATCCTCCGGGCAACTACCAGGGGCAAT 307 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1495 AGAACGGGCACATCTTGGTGGTAGCCAACTATGATCCACCGGGCAACTACCAGGGGCAAT 1554 Query 308 ACGCCAATAATGTGAGAAGATCTTAA 333 |||||||||||||||||||||||||| Sbjct 1555 ACGCCAATAATGTGAGAAGATCTTAA 1580 >c228642/f15p20/2116 isoform=c228642;full_length_coverage=15;non_full_length_coverage=20;isoform_length=2116 Length=2116 Score = 329 bits (178), Expect = 1e-89 Identities = 180/181 (99%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 8 AGGTGGCCAAGGTAGCCCAGGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 67 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1241 AGGTGGCCAAGGTAGCCCAAGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 1300 Query 68 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 1360 Query 128 ATAAGTTCACCGATGAGGAAGCTGTTAAAAATGCGGTGAAGTCGTGGTACGATGAGATCA 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1361 ATAAGTTCACCGATGAGGAAGCTGTTAAAAATGCGGTGAAGTCGTGGTACGATGAGATCA 1420 Query 188 G 188 | Sbjct 1421 G 1421 Score = 250 bits (135), Expect = 1e-65 Identities = 141/144 (98%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 188 GACATTTCACTCAAGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 247 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1478 GACATTTCACTCAGGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 1537 Query 248 AGAACGGGCACATCTTGGTGGTAGCCAACTATGATCCTCCGGGCAACTACCAGGGGCAAT 307 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1538 AGAACGGGCACATCTTGGTGGTAGCCAATTATGATCCACCGGGCAACTACCAGGGGCAAT 1597 Query 308 ACGCCAATAATGTGAGAAGATCTT 331 |||||||||||||||||||||||| Sbjct 1598 ACGCCAATAATGTGAGAAGATCTT 1621 >c236798/f2p21/1981 isoform=c236798;full_length_coverage=2;non_full_length_coverage=21;isoform_length=1981 Length=1981 Score = 322 bits (174), Expect = 2e-87 Identities = 179/181 (99%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 8 AGGTGGCCAAGGTAGCCCAGGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 AGGTGGCCAAGGTAGCCCAGGCTTGGGCGAGCAAGCTGATCGGTTCTATTGCCAGGGGCG 1085 Query 68 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 GTCACCTGCAGCACCGGCCTAACAACAAGTTCGGCGAAAACATATGGATGGGATCGGGAT 1145 Query 128 ATAAGTTCACCGATGAGGAAGCTGTTAAAAATGCGGTGAAGTCGTGGTACGATGAGATCA 187 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1146 ATAAGTTCACAGATGAGGAAGCTGTTAAAAA-GCGGTGAAGTCGTGGTACGATGAGATCA 1204 Query 188 G 188 | Sbjct 1205 G 1205 Score = 270 bits (146), Expect = 7e-72 Identities = 146/146 (100%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 188 GACATTTCACTCAAGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 GACATTTCACTCAAGTTGTGTGGAAGAGCAGTTCCAAACTTGGAGTGGGCATTGCCAGGA 1321 Query 248 AGAACGGGCACATCTTGGTGGTAGCCAACTATGATCCTCCGGGCAACTACCAGGGGCAAT 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 AGAACGGGCACATCTTGGTGGTAGCCAACTATGATCCTCCGGGCAACTACCAGGGGCAAT 1381 Query 308 ACGCCAATAATGTGAGAAGATCTTAA 333 |||||||||||||||||||||||||| Sbjct 1382 ACGCCAATAATGTGAGAAGATCTTAA 1407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23285980564 Database: SS_all_quivered_hq.fasta Posted date: Feb 25, 2019 4:32 PM Number of letters in database: 76,657,983 Number of sequences in database: 42,166 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5