BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= AQR58533.1

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c230316/f4p3/2066isoform=c230316;full_length_coverage=4;non_full_...  1345    0.0  


>c230316/f4p3/2066 isoform=c230316;full_length_coverage=4;non_full_length_coverage=3;isoform_length=2066
Length=2066

 Score = 1345 bits (728),  Expect = 0.0
 Identities = 740/745 (99%), Gaps = 4/745 (1%)
 Strand=Plus/Plus

Query  12   AATGCAAAGAAAAACAACGTCCAATAAAATGTTTGTCCGTTCAAACATTATAAAGTGTTT  71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  AATGCAAAGAAAAACAACGTCCAATAAAATGTTTGTCCGTTCAAACATTATAAAGTGTTT  292

Query  72   TCTGTTAGCTATAGTTCTTTTTATACTGTACAAAGTAGTTGTGTTCTTGAGTGCTAAGTC  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  TCTGTTAGCTATAGTTCTTTTTATACTGTACAAAGTAGTTGTGTTCTTGAGTGCTAAGTC  352

Query  132  AAATCCAGAGGAAGCCAAGCTTCAAGCTAAGATCAATTTGGAACCTGGTTTAATTCCAAA  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  353  AAATCCAGAGGAAGCCAAGCTTCAAGCTAAGATCAATTTGGAACCTGGTTTAATTCC-AA  411

Query  192  AATCCCTATCAAAGTATCCGTCTATTACGAGGCACTATGTCCTGACTCAAGACATTTTGT  251
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  412  AATCCCTATCAAAGTATCTGTCTATTACGAGGCACTATGTCCTGACTCAAGACATTTTGT  471

Query  252  GTTACACCAGCTAGTTCCAGTGTATGAGAAAGGATCCAGGATAATGGACTATGAACTTGT  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  GTTACACCAGCTAGTTCCAGTGTATGAGAAAGGATCCAGGATAATGGACTATGAACTTGT  531

Query  312  CCCATATGGGAAAGCCAAGACTGAAGAATTGGTGCCTCCTGGAAACCGGTACAAATTTCA  371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532  CCCATATGGGAAAGCCAAGACTGAAGAATTGGTGCCTCCTGGAAACCGGTACAAATTTCA  591

Query  372  CTGTCAGCATGGTTCAGTGGAATGTCACGCTAACAAAATCCATGCCTGCGCCATTAAGAA  431
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  592  CTGTCAGCATGGTTCAGTGGAATGTCACGCTAACAAAATCCATG-CTGCGCCATTAAGAA  650

Query  432  TATTGAGAACAAAGCAACCCTGTTGAAATATGTAGCCTGTATGATCAACGATAACTACGA  491
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  651  TA-TGAGAACAAAGCAACCCTGTTGAAATATGTAGCCTGTATGATCAACGATAACTACGA  709

Query  492  GGCAGAACAAATAGCTCTTGATTGCTCAAGACAACACAACATTGACGTGAACCCCATCTT  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  710  GGCAGAACAAATAGCTCTTGATTGCTCAAGACAACACAACATTGACGTGAACCCCATCTT  769

Query  552  GCAATGTGCCAGAGGTGTGGAAGGAGAAATCCTGTTGAAGACTTATGGTGAAATGACATA  611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770  GCAATGTGCCAGAGGTGTGGAAGGAGAAATCCTGTTGAAGACTTATGGTGAAATGACATA  829

Query  612  TGCTCTGACTCCCAAGGTGTCTTTCATTCCCACAATCCTGATCAATGGAAATCAATACAA  671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  830  TGCTCTGACTCCCAAGGTGTCTTTCATTCCCACAATCCTGATCAATGGAAATCAATACAA  889

Query  672  TCAGGCACACATATTGAAAAACCTGTGGGGCAGCGTTTGTGCATTGTTCCCAGAGTCCAG  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  890  TCAGGCACACATATTGAAAAACCTGTGGGGCAGCGTTTGTGCATTGTTCCCAGAGTCCAG  949

Query  732  TCAGCCTAAGGAGTGCAGCAGATGA  756
            |||||| ||||||||||||||||||
Sbjct  950  TCAGCC-AAGGAGTGCAGCAGATGA  973



Lambda      K        H
    1.34    0.624     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 55160016910


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5