BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= 1646

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM026700.1.1Golgi-associated plant pathogenesis-related prote...  1048    0.0  


>DcitrM026700.1.1 Golgi-associated plant pathogenesis-related protein 1 (AHRD V3.11 
*-* tr|A0A067RAH6|A0A067RAH6_ZOONE). Similar to MCOT22308.0.CC. 
AED 0.00| InterPro:IPR014044,Pfam:PF00188
Length=987

 Score = 1048 bits (567),  Expect = 0.0
 Identities = 589/600 (98%), Gaps = 0/600 (0%)
 Strand=Plus/Plus

Query  1    ATGCACCAAAAAACCAAGGTAACAACAACCACCACTACCACTAAAAAAACAACTAGCAGC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||
Sbjct  293  ATGCACCAAAAAACCAAGGTCACAACAACCACCACTACCACTAAAAAACAAACTAGCAGC  352

Query  61   CAGAAAGGGGCACCACCTCAGCAACAGGCACAGAAAGAACTCAAGACTATTCCTGAAGAC  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  CAGAAAGGAGCACCACCTCAGCAACAGGCACAGAAAGAACTCAAGACTATTCCTGAAGAC  412

Query  121  AAGACTACAGGGGTGATAAGGGCCGCCCTGAAGGCTCACAATGAGAAGCGAGGCTTGCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  AAGACTACAGGGGTGATAAGGGCCGCCCTGAAGGCTCACAATGAGAAGCGAGGCTTGCAT  472

Query  181  GGGTGCCCCCCACTCGGGTTCAATGAGGACTTGGCTAAACTAGCAAAGGACTGGGCAGAG  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  GGGTGCCCCCCGCTCGGGTTCAATGAGGACTTGGCTAAACTAGCAAAGGACTGGGCAGAG  532

Query  241  AAACTGATTCAGCGAAACGCATTCGAACATCGGCCGGACAACGCGTACGGTGAAAACATC  300
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  533  AAGCTGATTCAGCGAAACGCATTCGAACATCGGCCGGACAACGCGTACGGTGAGAACATC  592

Query  301  TACATGCGCGGTGGCACCAGCCCCATCACCGATGAACAAGCGGTGCAGAATGCGGTGGAC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TACATGCGCGGTGGCACCAGCCCCATCACCGATGAACAAGCGGTGCAGAATGCGGTGGAC  652

Query  361  AGTTGGTACAACGAAATCAAAGACTACAAACTGTTTGGCCGCGAGCCCACCATGCAGGAG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  653  AGTTGGTACAACGAAATCAAAGACTACAAACTGTTTGGCCGCGAGCCCACCATGCAGGAG  712

Query  421  CTCATGTCTGGGAGTCCCACAGGTCATTTCACTCAGCTGATATGGAAGGGTACCAAAGCG  480
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  713  CTTATGTCTGGGAGTCCCACAGGTCATTTCACTCAGCTGATATGGAAGGGTACCAAAGCG  772

Query  481  GTGGGCATTGGGATCGCCAAGGGAGATCAGAACCGAGTAGTAGTCGTGGCCAACTATTCA  540
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  773  GTCGGCATTGGGATCGCTAAGGGAGATCAGAACCGAGTAGTAGTCGTGGCCAACTATTCA  832

Query  541  CCTGCCGGTAATGTGGTCAGATATTTCAACGAGAATGTTCCCAATGTCGTCAAGAAATAA  600
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  833  CCTGCCGGTAATGTGGTCAGATATTTCAACGAGAATGTTCCCAATGTAGTCAAGAAATAA  892



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 27902011850


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5