BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM005615.1.1peritrophin D1-RA. (AHRD V3.11 *** Peritrophin-A-...  433     7e-121
DcitrM005610.1.1Unknown protein. AED 0.27                             119     2e-26 


>DcitrM005615.1.1 peritrophin D1-RA. (AHRD V3.11 *** Peritrophin-A-PA FBpp0077027). 
Similar to MCOT09616.0.MT. AED 0.00
Length=1104

 Score = 433 bits (234),  Expect = 7e-121
 Identities = 357/418 (85%), Gaps = 1/418 (0%)
 Strand=Plus/Minus

Query  1    GCCAAAACTCTTGAACCGAGGGGAAATATTTTTGACCCTTTTTACCCCTATTTACACGGT  60
            |||| ||||| ||||| |||||||||||| |||||| |||||||| ||||||||||| ||
Sbjct  996  GCCAGAACTCATGAACTGAGGGGAAATATATTTGACACTTTTTACACCTATTTACACTGT  937

Query  61   TTATTATCATGAAGAAAATGGGCCTCAA-AATAGGGAGCTTTGACATTTTGGGTTAATTT  119
            |||| |||||||  || ||| ||||||| | |||| ||||| | ||||||||||| ||||
Sbjct  936  TTATGATCATGATCAATATGTGCCTCAATATTAGGTAGCTTCGTCATTTTGGGTTGATTT  877

Query  120  TTCTGATGGGGACTTTACTTTGAATTTGTTAACCTTGATTTTGTGGGAATGTATGCTAAA  179
            |||||||| ||||||||| |||||||||||||| |||||||||| || |||||||||| |
Sbjct  876  TTCTGATGTGGACTTTACATTGAATTTGTTAACATTGATTTTGTTGGTATGTATGCTAGA  817

Query  180  GCCTTCTTTCTATTGAATGTGATTCTTTTCAGTTTTTTTCAAAATACCCCTCGGGGCCCA  239
            | ||||||||||||| ||||||||||||||||| ||| |||  |||  |||| |||||||
Sbjct  816  GTCTTCTTTCTATTGTATGTGATTCTTTTCAGTATTTATCAGTATAGTCCTCTGGGCCCA  757

Query  240  AGCAGGCCAAAAAAGCTTCTTCAAACAGTTTTCCTTCTCCCCCCAAAATAAAACAAGGGG  299
            |||||| || | ||||||| || ||||||||||| ||||| | | | || | || |||| 
Sbjct  756  AGCAGGTCAGAGAAGCTTCATCGAACAGTTTTCCATCTCCGCACGAGATGAGACGAGGGT  697

Query  300  GTCCATCAACACAGGGGAACAAACCCTCCCTGTCTCCTGGACCGGGGAATCTGGGGTATG  359
            ||||||||||||||| || || || ||| |||||||||||| ||||||||||||||||||
Sbjct  696  GTCCATCAACACAGGTGATCAGACGCTCTCTGTCTCCTGGAACGGGGAATCTGGGGTATG  637

Query  360  GCCAAAACTGGGGGGCGACTGAATGAGGGTTAACACTGTCGGGGCACTTAATTCCAAC  417
            |||| |||| || |||||||||||||||||  |||||||| |||||||| | ||||||
Sbjct  636  GCCAGAACTTGGCGGCGACTGAATGAGGGTCGACACTGTCTGGGCACTTGAATCCAAC  579


>DcitrM005610.1.1 Unknown protein. AED 0.27
Length=2305

 Score = 119 bits (64),  Expect = 2e-26
 Identities = 106/127 (83%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  228   CCTCGGGGCCCAAGCAGGCCAAAAAAGCTTCTTCAAACAGTTTTCCTTCTCCCCCCAAAA  287
             |||| ||||||||||||| || | ||||||| || ||||||||||| ||||| | | | |
Sbjct  1897  CCTCTGGGCCCAAGCAGGTCAGAGAAGCTTCATCGAACAGTTTTCCATCTCCGCACGAGA  1956

Query  288   TAAAACAAGGGGGTCCATCAACACAGGGGAACAAACCCTCCCTGTCTCCTGGACCGGGGA  347
             | | || |||| ||||||||||||||| || || || ||| |||||||||||| ||||||
Sbjct  1957  TGAGACGAGGGTGTCCATCAACACAGGTGATCAGACGCTCTCTGTCTCCTGGAACGGGGA  2016

Query  348   ATCTGGG  354
             |||||||
Sbjct  2017  ATCTGGG  2023



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 19226009880


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5