BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= 324165

Length=1695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM046790.1.1Voltage-dependent T-type calcium channel subunit ...  1079    0.0  


>DcitrM046790.1.1 Voltage-dependent T-type calcium channel subunit alpha-1G (AHRD 
V3.11 *-* tr|F4WXT5|F4WXT5_ACREC). Similar to MCOT17228.0.CT. 
AED 0.09
Length=719

 Score = 1079 bits (584),  Expect = 0.0
 Identities = 590/593 (99%), Gaps = 0/593 (0%)
 Strand=Plus/Plus

Query  1103  TGGAGAAACAAAGGCGGAGAAAGATGTCGCAGTGTTGCAGCGACGATGTGTACAGTTCTT  1162
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     TGGAGAAACAAAGGCGGAGAAAGATGTCGCAGTGTTGCAGCGACGATGTGTACAGTTCTT  60

Query  1163  GTTCCTATTCTGAAAACAGCGACAGCTATGTTCAGGATGTCGAATGCATTCGACAGATCA  1222
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    GTTCCTATTCTGAAAACAGCGACAGCTATGTTCAGGATGTCGAATGCATTCGACAGATCA  120

Query  1223  AAGATAACGGCGAGAAAGAGAGACTTTCCCGAGTCAAATGCAAACAGAAATGCAATCTAC  1282
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   AAGATAACGGCGAGAAAGAGAGACTTTCCCGAGTCAAATGCAAACAGAAATGCAATCTAC  180

Query  1283  ATAAAGACAGTGACCTAGTGTGTCAGGCGCCACCTATAATCACTCACACAGCTGCTACTC  1342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   ATAAAGACAGTGACCTAGTGTGTCAGGCGCCACCTATAATCACTCACACAGCTGCTACTC  240

Query  1343  CTCAGGATAGTCCCAATGGCACTCTAGAGCGACAGCATCACCACAACAAACTGTCCCTGT  1402
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  241   CTCAGGATAGTCCCAATGGCACTCTAGAGCGACAGCATCACCACAACAAACTGTCCCTAT  300

Query  1403  ATCAGTATCCCAGCAATCTGTCCATAGAATCCATTGATAACTCCGTCTCTTCCCAGAACA  1462
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   ATCAGTACCCCAGCAATCTGTCCATAGAATCCATTGATAACTCCGTCTCTTCCCAGAACA  360

Query  1463  GTACTGGTCCAGGACTGCTCAGGCCTCCTCAACTTGTTACCACCAACACGGGGACTGCCA  1522
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   GTACTGGTCCAGGACTGCTCAGGCCTCCTCAACTTGTTACCACCAACACGGGGACTGCCA  420

Query  1523  GTAACAACAGTCTGAATGTAACCAACACGGGGAACCAATCAGGTGTCGCGAATAATGGTG  1582
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  421   GTAACAACAGTCTGAATGTAACCAACACGGGGAACCAATCCGGTGTCGCGAATAATGGTG  480

Query  1583  GCCATCTTGCTACCAAGAAAGACCAGTCTAGTTGCACTTCAAAATCCTCGAGAGGCTATT  1642
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   GCCATCTTGCTACCAAGAAAGACCAGTCTAGTTGCACTTCAAAATCCTCGAGAGGCTATT  540

Query  1643  CATTCAAATTGAAGCGCGGCTCCACCAAGAAGAGACAGGGACACATCCACCAC  1695
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541   CATTCAAATTGAAGCGCGGCTCCACCAAGAAGAGACAGGGACACATCCACCAC  593



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 80946409874


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5