BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Csinensis_154_v1.1.cds_primaryTranscriptOnly_annot.fasta 25,379 sequences; 29,155,890 total letters Query= Untitled_sequence Length=816 Score E Sequences producing significant alignments: (Bits) Value orange1.1g042174methylene response factor 1, similar to AT3G23240.1 887 0.0 orange1.1g039409methylene response factor 1, similar to AT3G23240.1 174 6e-43 orange1.1g047387methylene response factor 1, similar to AT3G23240.1 132 4e-30 orange1.1g047100methylene-responsive element binding factor 13, s... 106 2e-22 orange1.1g037347mIntegrase-type DNA-binding superfamily protein, ... 82.4 4e-15 orange1.1g047241mIntegrase-type DNA-binding superfamily protein, ... 78.7 5e-14 >orange1.1g042174m ethylene response factor 1, similar to AT3G23240.1 Length=765 Score = 887 bits (480), Expect = 0.0 Identities = 484/486 (99%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 331 TCAGACAAGTCATACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATA 390 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 TCAAACAAGTCATACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATA 339 Query 391 AGGGACTCCACGAGAAACGGGGTTAGAGTTTGGCTAGGCACATTCGACAGCGCTGAGGCA 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 AGGGACTCCACGAGAAACGGGGTTAGAGTTTGGCTAGGCACATTCGACAGCGCTGAGGCA 399 Query 451 GCTGCTTTAGCCTACGATCAAGCTGCATTCTCAATGCGGGGTTCCCTGGCTACCCTCAAT 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 GCTGCTTTAGCCTACGATCAAGCTGCATTCTCAATGCGGGGTTCCCTGGCTACCCTCAAT 459 Query 511 TTTCCTGCAGATATGGTCAGAGAATCTCTTCAAGAAATGAAGTACAAGTGCGAAGATGGG 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 TTTCCTGCAGATATGGTCAGAGAATCTCTTCAAGAAATGAAGTACAAGTGCGAAGATGGG 519 Query 571 TGCTCGCCGGTTGTGGCTCTCAAGAAACGACACTCTATCAGAAAGAAGTCCAAATCTTCA 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 TGCTCGCCGGTTGTGGCTCTCAAGAAACGACACTCTATCAGAAAGAAGTCCAAATCTTCA 579 Query 631 TCATCATCTTCGGTGAGTAACAAGAAAATTAAAATGAATAATCAAGATCGCGATCACCAT 690 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 580 TCATCATCTTCGGTGAGTAACAAGAAAATCAAAATGAATAATCAAGATCGCGATCACCAT 639 Query 691 CAACTAGCTGTAGCTGTAGGGTCACAATTATCGCAAAATGTGGTGGTGTTTGAAGATTTG 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 CAACTAGCTGTAGCTGTAGGGTCACAATTATCGCAAAATGTGGTGGTGTTTGAAGATTTG 699 Query 751 GGAGCTGATTATCTAGAGCAACTTTTGATGAGCTCATGTGGAGCTGCTACTGCTACTATT 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 GGAGCTGATTATCTAGAGCAACTTTTGATGAGCTCATGTGGAGCTGCTACTGCTACTATT 759 Query 811 TGGTGA 816 |||||| Sbjct 760 TGGTGA 765 Score = 448 bits (242), Expect = 3e-125 Identities = 271/283 (96%), Gaps = 9/283 (3%) Strand=Plus/Plus Query 1 ATGGAATCATCTTGTCTTCAAATCTCGGCGGAGTCTCCATTCAATTCATCAGCGTTTGAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAATCATCTTGTCTTCAAATCTCGGCGGAGTCTCCATTCAATTCATCAGCGTTTGAC 60 Query 61 GATCAATCATTCTCGTGGGATGAGCTTCTGTTCAGCCACAATAGTTCGCTGCCTTTTAAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATCAATCATTCTCGTGGGATGAGCTTCTGTTCAGCCACAATAGTTCGCTGCCTTTTAAC 120 Query 121 ATCAACGACTCAGAGGAAACGCTGCTTCTTGATGTATTAGCCGAAGGGACAACAACTGGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATCAACGACTCAGAGGAAACGCTGCTTCTTGATGTATTAGCCGAAGGGACAACAACTGGA 180 Query 181 ACGACTAAAGAATCTTCAGCAGACTCCAACTCTAGTAATAAT--CAT-AACAACAG---- 233 ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 181 ACGACTAAAGAATCTTCAGCAGACTCCAACTCTAGTAATAACAACAACAACAACAACAAC 240 Query 234 --CAACAACAAAGAAGATCACGAAGTGACTTCTTCAACTTCAA 274 ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AACAACAACAAAGAAGATCACGAAGTGACTTCTTCAACTTCAA 283 >orange1.1g039409m ethylene response factor 1, similar to AT3G23240.1 Length=675 Score = 174 bits (94), Expect = 6e-43 Identities = 222/285 (78%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 334 GACAAGTCATACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGG 393 || |||||||| |||||||| | |||||||||||||||||||||| || || |||||| Sbjct 244 GAAAAGTCATATAGAGGCGTTCGACGGCGGCCGTGGGGGAAATTTGCAGCAGAAATAAGG 303 Query 394 GACTCCACGAGAAACGGGGTTAGAGTTTGGCTAGGCACATTCGACAGCGCTGAGGCAGCT 453 || || || || | ||| |||| ||||||||||| |||||||| || ||||| |||||| Sbjct 304 GATTCAACTAGGCATGGGATTAGGGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAGCT 363 Query 454 GCTTTAGCCTACGATCAAGCTGCATTCTCAATGCGGGGTTCCCTGGCTACCCTCAATTTT 513 ||||| || |||||||||||||| ||||||||| |||| || || | ||||||||| Sbjct 364 GCTTTGGCTTACGATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCAATACTCAATTTT 423 Query 514 CCTGCAGATATGGT-CAGAGAATCTCTTCAAGAAATGAAGTACAAGTGCGAAGATGGGTG 572 |||| || | ||| || |||||| ||| |||| ||||||| || ||| || || || Sbjct 424 CCTGTTGAAAGGGTTCA-AGAATCACTTAAAGACATGAAGTGTAACACCGAGGAGGGATG 482 Query 573 CTCGCCGGTTGTGGCTCTCAAGAAACGACACTCTATCAGAAAGAA 617 ||| || || || || || |||| ||| ||||| |||| ||| Sbjct 483 CTCACCTGTGGTTGCACTAAAGAGGAAACATTCTATGAGAA-GAA 526 >orange1.1g047387m ethylene response factor 1, similar to AT3G23240.1 Length=720 Score = 132 bits (71), Expect = 4e-30 Identities = 170/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 340 TCATACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGGGACTCC 399 || || ||||| |||||| | ||||| |||||||||| || |||||||| ||||| || Sbjct 322 TCCTATAGAGGAGTGAGGCGACGGCCATGGGGGAAATACGCAGCGGAGATTAGGGATTCG 381 Query 400 ACGAGAAACGGGGTTAGAGTTTGGCTAGGCACATTCGACAGCGCTGAGGCAGCTGCTTTA 459 || ||||| |||||||| |||||| |||| || || |||| |||||||| || |||||| Sbjct 382 ACAAGAAATGGGGTTAGGGTTTGGATAGGAACCTTTGACACTGCTGAGGCTGCAGCTTTA 441 Query 460 GCCTACGATCAAGCTGCATTCTCAATGCGGGGTTCCCTGGCTACCCTCAATTTTCCTG-C 518 || || |||||||||||||| ||||| | ||| || |||| || || ||||||| | Sbjct 442 GCTTATGATCAAGCTGCATTTGCAATGAGAGGTACCACGGCTGTACTAAACTTTCCTGTC 501 Query 519 -AGATATGGTCA-GAGAATCTCTTCAAGAAATGAAGTA 554 ||| | | | | ||| || |||| |||||||||||| Sbjct 502 GAGAAA-GTTTACGAG--TCGCTTCTAGAAATGAAGTA 536 >orange1.1g047100m ethylene-responsive element binding factor 13, similar to AT2G44840.1 Length=702 Score = 106 bits (57), Expect = 2e-22 Identities = 137/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 343 TACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGGGACTCCACG 402 || ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| | | | Sbjct 403 TATAGAGGCGTGAGGAGGAGGCCGTGGGGGAAGTTTGCTGCGGAGATAAGGGACCCTAAG 462 Query 403 AGAAACGGGGTTAGAGTTTGGCTAGGCACATTCGACAGCGCTGAGGCAGCTGCTTTAGCC 462 | || |||| ||||||||||| ||||| | || | | |||||| || || || || Sbjct 463 AAGAATGGGGCAAGAGTTTGGCTGGGCACCTATGATACCCCTGAGGGTGCAGCATTTGCT 522 Query 463 TACGATCAAGCTGCATTCTCA--ATGCGGGGTTCCCTGGCTACCCTCAATTTTCCT 516 || ||| ||| || || ||| ||||| || ||| ||||| |||||||||||| Sbjct 523 TATGATAGAGCCGC-TT-TCAAGATGCGAGGCTCCAAGGCTAAGCTCAATTTTCCT 576 >orange1.1g037347m Integrase-type DNA-binding superfamily protein, similar to AT4G18450.1 Length=888 Score = 82.4 bits (44), Expect = 4e-15 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 343 TACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGGGACTCCACG 402 || || || ||||| ||||| || ||||| || | |||||||||||||||||| || || Sbjct 412 TATAGGGGAGTGAGAAGGCGTCCATGGGGTAAGTATGCGGCGGAGATAAGGGATTCATCG 471 Query 403 AGAAACGGGGTTAGAGTTTGGCTAGGCACATTCGACAGCGCTGAGGCAGCTGCTTTAGCC 462 || || || | |||||||||| || || || |||| ||||||| ||||||||| || Sbjct 472 AGGAAAGGTGCCCGAGTTTGGCTTGGAACTTTTGACACAGCTGAGGAAGCTGCTTTGGCT 531 Query 463 TACGATCAAG-CTGC 476 || || |||| |||| Sbjct 532 TATGA-CAAGGCTGC 545 >orange1.1g047241m Integrase-type DNA-binding superfamily protein, similar to AT3G23230.1 Length=429 Score = 78.7 bits (42), Expect = 5e-14 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 342 ATACAGAGGCGTGAGGAGGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGGGACTCCAC 401 |||| ||||||||||| || ||||||||||||| ||||||||||||||| | || || | Sbjct 30 ATACCGAGGCGTGAGGCGGAGGCCGTGGGGGAAGTTTGCGGCGGAGATACGAGATTCGAA 89 Query 402 GAGAAACGGGGTTAGAGT-T-TGGCTAGGCACATTCGACAGCGCTGAGGCAGCTGCTTTA 459 || |||| || || | |||||||| || || ||| ||||||| ||| ||| | Sbjct 90 TAGGCACGGCC--AGCGTGTGTGGCTAGGAACTTTTAACACGGCTGAGGAAGCGGCTAGA 147 Query 460 GCCTACGATCAAGCTGCATTCTCAATGCGGGGTTCCCTGGCTACCCTCAATTTTCC 515 || || ||| |||||| | |||||| ||||| | |||| | || |||||||| Sbjct 148 GCTTATGATAGAGCTGCTTATTCAATGAGGGGTCACTTGGCCATTCTTAATTTTCC 203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22560439265 Database: Csinensis_154_v1.1.cds_primaryTranscriptOnly_annot.fasta Posted date: Jul 15, 2015 1:51 PM Number of letters in database: 29,155,890 Number of sequences in database: 25,379 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5