TBLASTN 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Candidatus_Liberibacter_asiaticus_psy62_genome.fasta
           1 sequences; 1,227,328 total letters



Query= Untitled_sequence

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|346722692|ref|NC_012985.3|  Candidatus Liberibacter asiaticus ...  1105    0.0  


>gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus str. psy62 chromosome, complete 
genome
Length=1227328

 Score = 1105 bits (2858),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 562/563 (99%), Positives = 563/563 (100%), Gaps = 0/563 (0%)
 Frame = +2

Query  1       MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV  60
               +AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV
Sbjct  572909  VAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV  573088

Query  61      NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF  120
               NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF
Sbjct  573089  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF  573268

Query  121     GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI  180
               GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI
Sbjct  573269  GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI  573448

Query  181     NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE  240
               NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE
Sbjct  573449  NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE  573628

Query  241     IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS  300
               IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS
Sbjct  573629  IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS  573808

Query  301     QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA  360
               QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA
Sbjct  573809  QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA  573988

Query  361     VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN  420
               VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN
Sbjct  573989  VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN  574168

Query  421     SGTVQVSFMDILSRHFATVINAlvflvgtllvtflglHALRRLHNIDDAKKGEVGGKSIL  480
               SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL
Sbjct  574169  SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL  574348

Query  481     SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE  540
               SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE
Sbjct  574349  SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE  574528

Query  541     RFAKILRKWARSEIEDRYTQHIS  563
               RFAKILRKWARSEIEDRYTQHIS
Sbjct  574529  RFAKILRKWARSEIEDRYTQHIS  574597



Lambda      K        H        a         alpha
   0.317    0.131    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 196332480


  Database: Candidatus_Liberibacter_asiaticus_psy62_genome.fasta
    Posted date:  Jul 20, 2015  1:36 PM
  Number of letters in database: 1,227,328
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40