BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitri_transcriptome.fasta
           60,261 sequences; 104,618,276 total letters



Query= DC06G037760.1

Length=1134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcDTr03021.2DC-STAMP domain-containing protein 1                      704     0.0  


>DcDTr03021.2 DC-STAMP domain-containing protein 1
Length=3686

 Score = 704 bits (381),  Expect = 0.0
 Identities = 389/393 (99%), Gaps = 0/393 (0%)
 Strand=Plus/Plus

Query  742   GGTCTTCACTATCTGGAAAAGCTGAACCAGATCAAACTAACAAGTTCTCAACTCCGAAGC  801
             ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  317   GGTCTTCACTATCTGGAAAAGCTGAACCAGATCAAACTAACAAGTTCTCAATTACGAAGC  376

Query  802   ATTCTGCTCACTCACAGTCATATCTGTGAAGTTGGCAAGATGATCAACCAGAGTTACGGG  861
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  377   ATTCTGCTCACTCACAGTCATATCTGTGAAGTTGGCAAGATGATCAACCAGAGTTACGGG  436

Query  862   ATGCAGGTGCTAGTCAGTTTCATAATCACATTCATCGTGTTGGTATCCATGCTCTTCTAC  921
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  437   ATGCAGGTGCTAGTCGGTTTCATAATCACATTCATCGTGTTGGTATCCATGCTGTTCTAC  496

Query  922   CTACCAGTCGGTATTCTGGCACATCTGAGCGGTAAAAACAATCTGTTCTTTTCCTTCGCT  981
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  497   CTACCAGTCGGTATTCTGGCACATCTGAGCGGTAAAAACAATCTGTTCTTTTCCTTCGCT  556

Query  982   CATCTGTACTGGTTCATACTGAAAATGTTCTTGTGCATTTGGTTCGCCAAGGTCATCACT  1041
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  557   CATCTGTACTGGTTCATACTGAAAATGTTCTTGTGCATTTGGTTCGCCAAGGTCATCACT  616

Query  1042  GAATGTCAACAGGAGGTACTGTACACGTCAAAGTTTGGCTACGAGCTGATGATTGAAGAC  1101
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  617   GAATGTCAACAGGAGGTACTGTACACGTCAAAGTTTGGCTACGAGCTGATGATTGAAGAC  676

Query  1102  AAAGTCCCTTCTCTGACCAATCAGGTGAGCTAG  1134
             |||||||||||||||||||||||||||||||||
Sbjct  677   AAAGTCCCTTCTCTGACCAATCAGGTGAGCTAG  709



Lambda      K        H
    1.34    0.622     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 114181050920


  Database: Dcitri_transcriptome.fasta
    Posted date:  Apr 30, 2019 10:57 AM
  Number of letters in database: 104,618,276
  Number of sequences in database:  60,261



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5