BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= DsA

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08...  998     0.0   
DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29...  560     4e-159
DcitrM023795.1.1Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PS...  350     1e-95 


>DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). 
AED 0.01
Length=1863

 Score = 998 bits (540),  Expect = 0.0
 Identities = 540/540 (100%), Gaps = 0/540 (0%)
 Strand=Plus/Plus

Query  1    GTAGTCCATATTTCAGGGAATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  GTAGTCCATATTTCAGGGAATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTTC  478

Query  61   TGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  479  TGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAAG  538

Query  121  TCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGACTGCAGAAGTGTTACGCGTAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  TCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGACTGCAGAAGTGTTACGCGTAT  598

Query  181  CTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAACAGGGTCTCCTTACGGTAAGG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  CTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAACAGGGTCTCCTTACGGTAAGG  658

Query  241  TGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  659  TGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACCT  718

Query  301  CCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCAC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  719  CCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCAC  778

Query  361  TCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAATCCCTTCTAAACGTGCCAAAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  779  TCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAATCCCTTCTAAACGTGCCAAAA  838

Query  421  CAAATGCCACACCTGAAGATCTGTCGTCCACTTCAACCATCAATGATTCAATCGCTGCTA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  839  CAAATGCCACACCTGAAGATCTGTCGTCCACTTCAACCATCAATGATTCAATCGCTGCTA  898

Query  481  ACTACATCAATAAAACCCCCACACCTACACCTCCCATTCCTGATCAAACACCTCCTGCCA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  ACTACATCAATAAAACCCCCACACCTACACCTCCCATTCCTGATCAAACACCTCCTGCCA  958


>DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). 
Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36
Length=591

 Score = 560 bits (303),  Expect = 4e-159
 Identities = 368/394 (93%), Gaps = 25/394 (6%)
 Strand=Plus/Plus

Query  30   ACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCAT  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCAT  60

Query  90   GCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCG  149
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCCTTGTAGAATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCG  120

Query  150  TTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATT  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATT  180

Query  210  AATCGCGAAACAGGG------------------------TCTCCTTACGGTAAGGTGCCA  245
            |||||||||||||||                        |||||||||||||||||||||
Sbjct  181  AATCGCGAAACAGGGGTAAGTCCCAGATTCAACTTTAGTTCTCCTTACGGTAAGGTGCCA  240

Query  246  AGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGA  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGA  300

Query  306  CATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAAC  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAAC  360

Query  366  AATAAACACCTCTCATCTCCTCTTGCTCAT-GAA  398
            |||||||||||||||||||||||||||||| |||
Sbjct  361  AATAAACACCTCTCATCTCCTCTTGCTCATAGAA  394


>DcitrM023795.1.1 Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PSAHI). AED 0.22
Length=390

 Score = 350 bits (189),  Expect = 1e-95
 Identities = 194/196 (99%), Gaps = 1/196 (1%)
 Strand=Plus/Plus

Query  29   GACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCA  88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  GACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCA  251

Query  89   TGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTC  148
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  TGCCCTTGTAGAATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTC  311

Query  149  GTTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACAT  208
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  GTTTCT-AAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACAT  370

Query  209  TAATCGCGAAACAGGG  224
            ||||||||||||||||
Sbjct  371  TAATCGCGAAACAGGG  386



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 24990497570


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5