BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM090340.1.1Unknown protein. Similar to MCOT11121.0.MM XP_017...  355     7e-98


>DcitrM090340.1.1 Unknown protein. Similar to MCOT11121.0.MM XP_017300042.1. AED 
0.00
Length=1116

 Score = 355 bits (192),  Expect = 7e-98
 Identities = 194/195 (99%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  1    ATGAAATACTTCACTTTCGGATTTCTGTTCTTCATGATCATCCAAGCTTTCTTCATCGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  ATGAAATACTTCACTTTCGGATTTCTGTTCTTCATGATCATCCAAGCTTTCTTCATCGCT  206

Query  61   CAAGCCGCTGCTGACTGCTGGTGGACCGGTTGCCAAAAGAACGACTGGAAGGTTGTTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  207  CAAGCCGCTGCTGACTGCTGGTGGACCGGTTGCCAAAAGAACGACTGGAAGGTTGTTGGC  266

Query  121  TGCCAACAGTACGGTCGTCAAGAAAAGGGAGTGAAAAATTGCAACGGCGGCAAAATGTAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  267  TGCCAACAGTACGGTCGTCAAGAAAAGGGAGTGAAAAATTGCAACGGTGGCAAAATGTAC  326

Query  181  AACTGCTGCAACTAG  195
            |||||||||||||||
Sbjct  327  AACTGCTGCAACTAG  341



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 8355041384


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5