BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM041130.1.1Neurocalcin-like protein (AHRD V3.11 *** tr|A0A03...  187     8e-47


>DcitrM041130.1.1 Neurocalcin-like protein (AHRD V3.11 *** tr|A0A034WTZ2|A0A034WTZ2_BACDO). 
Similar to MCOT03790.0.CT XP_017301045.1. AED 0.31
Length=2845

 Score = 187 bits (101),  Expect = 8e-47
 Identities = 369/499 (74%), Gaps = 15/499 (3%)
 Strand=Plus/Minus

Query  2     AACGGGATTCGCGGGGGGAAAAAAAAAAGGGAATGGGGATAAACCTTGGCCAAAATTTGG  61
             ||||||||||||| || |||  |||| |||  || ||||||| |||||  | ||||||||
Sbjct  2835  AACGGGATTCGCGAGGTGAATTAAAATAGGAGATTGGGATAATCCTTGTTCGAAATTTGG  2776

Query  62    GCTTTTTTAAAAAAAAAAGAAATCCTTATGACAAAAAAAGTTTACGAGATTCTTCAACTT  121
             |||||| || | | || ||| || | ||| |||||| |||| ||||||  ||||| ||  
Sbjct  2775  GCTTTTCTAGATAGAACAGAGATTCATATCACAAAAGAAGTCTACGAGTGTCTTCTAC--  2718

Query  122   TTCCTTTACATTTTTTGCCCCCTTTTTTTCAGGAAAAATTAAAGGGAAATTTTATCAATA  181
              ||  | |||| ||||| | || | ||||||| ||||  ||||| || ||||||||||||
Sbjct  2717  ATCACTCACATATTTTGACTCCATCTTTTCAGAAAAAGATAAAGTGATATTTTATCAATA  2658

Query  182   GGATTTCAAGGATTTTTCCCTGCCCGGAGGCCTGGAATCTTTGTTAATTCCAAGTATTGG  241
              |  ||| ||||||||||  || |  |||| |  ||||||||| |||||  ||||  || 
Sbjct  2657  TGTATTCGAGGATTTTTCATTGTCATGAGGACGTGAATCTTTGATAATTTTAAGT--TGA  2600

Query  242   GGGGGGGTAGGATCTTTTTTTCATAAAAAGCC-TAATCACCCAAG-GACCTCATTTTTAC  299
             ||  || ||||||  || |||||||| ||| | | || |   ||| ||| ||||||||||
Sbjct  2599  GGCTGGTTAGGATTCTTATTTCATAACAAGTCGTTATGA---AAGTGACATCATTTTTAC  2543

Query  300   ATAAATGAATC-CAAAACTTAATTAAAAAAAAATCCTAAACCAACCCTGTTTTCCAAAAA  358
             |  |||||||| |||||| |  | | ||| ||||  | || ||| | |||| ||  | ||
Sbjct  2542  AGTAATGAATCACAAAACATG-TCATAAATAAATTATGAATCAAACATGTTCTCGTACAA  2484

Query  359   CCCAAATTTTTCATTGAGGGGGGCTTTTTGGGGAACCCAAATCCCCCCCAAGGG-GAACT  417
             | ||||| |||||||||||| |||| |||| || || | ||||| |  ||| || ||  |
Sbjct  2483  CACAAATATTTCATTGAGGGAGGCTATTTGAGGCACACGAATCCTCTACAAAGGCGACAT  2424

Query  418   TTCCTTCCCGGGTCTGCAAGGGTGGGCCTCTAAAATTTAAAATTTTTTTTAAAAAACCCA  477
             ||| ||| | |   |||||||| | |||||| ||||||| |  ||| | || |||| |||
Sbjct  2423  TTC-TTCTCTGTATTGCAAGGGAGTGCCTCTGAAATTTATATATTTATCTAGAAAAGCCA  2365

Query  478   AATCCCAA-AAAAAA-TAT  494
             ||||  || |||||| |||
Sbjct  2364  AATCGGAACAAAAAAATAT  2346



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 23049488050


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5