BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= 3546

Length=1308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM083260.1.1CG13868-PA (AHRD V3.11 *-* FBpp0085610). Similar ...  1205    0.0  


>DcitrM083260.1.1 CG13868-PA (AHRD V3.11 *-* FBpp0085610). Similar to MCOT13561.0.CO. 
AED 0.07
Length=2613

 Score = 1205 bits (652),  Expect = 0.0
 Identities = 660/664 (99%), Gaps = 0/664 (0%)
 Strand=Plus/Plus

Query  1     ATGAGGGTCTATTTGAAAAGATGTTCTTCTGTTACCATGCTCAGTATTTTAGTTTTGATC  60
             ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  753   ATGTGGGTCTATTTGAAAAGATGTTCTTCTGTTACAATGCTCAGTATTTTAGTTTTGATC  812

Query  61    TGCAGCTCACTCATTGCCATCTATCTGTACTCTGGACCTCCCAATTTCCTCAACAACGAA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813   TGCAGCTCACTCATTGCCATCTATCTGTACTCTGGACCTCCCAATTTCCTCAACAACGAA  872

Query  121   AGCGAATCTCAAGGCACAGTGACCAAGTTGGGATGTCGATTCCTCACAGATGGGTATGAC  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  873   AGCGAATCTCAAGGCACAGTGACCAAGTTGGGATGTCGATTCCTCACAGATGGGTATGAC  932

Query  181   TTGAGCCACCTTGTAGGAGGGAAAGTGGAGGGGAAGACATTGGAGGAGAAGTACTTCCCC  240
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  933   TTGAGCCACCCTGTAGGAGGGAAAGTGGAGGGGAAGACATTGGAGGAGAAGTACTTCCCC  992

Query  241   ACTCCTGTATGGGGAGAGGGGGAGGGAGCAATGGAATTGACCAGCGAAAGCGAACTTGAG  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  993   ACTCCTGTATGGGGAGAGGGGGAGGGAGCAATGGAATTGACCAGCGAAAGCGAACTTGAG  1052

Query  301   GATCTAATCGAACGTATTGGACAAATACACAGAGAAGTCCTGGAAAATATTCATTACAAC  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1053  GATCTAATCGAACGTATTGGACAAATACACAGAGAAGTCCTGGAAAATATTCATTACAAC  1112

Query  361   TCGGTGGATAACTATTTACAATTCTACGAAGACTACAAACGGTCCGGTCTCGATTTCCAC  420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1113  TCGGTGGATAACTATTTACAATTCTACGAAGACTACAAACGGTCCGGTCTCGATTTCCAC  1172

Query  421   ACATTCTACGCTGGTTACCGGCCCACATTCCGGCCACATGAGAACTGCATCGGCCTCGCT  480
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1173  ACATTCTACGCTGGCTACCGGCCCACATTCCGGCCACATGAGAACTGCATCGGCCTCGCT  1232

Query  481   ATAGAGGTGCTAGAGCGGCTACATACCCATCTCACACCGCGGTGGCCACATTTGGCGCGG  540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1233  ATAGAGGTGCTAGAGCGGCTACATACCCATCTCACACCGCGGTGGCCACATTTGGCGCGG  1292

Query  541   TACACCTATCTGGCCTCCTGTTGGATGAATATTTCGGCCGAGTGGATTAATCAGGTTGAG  600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1293  TACACCTATCTGGCCTCCTGTTGGATGAATATTTCGGCCGAGTGGATTAATCAGGTTGAG  1352

Query  601   GGGAAGATCACGGAGGAGATTGATACCCGAGGACTGGCCAGGAGCGGATTGCAACATGTT  660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1353  GGGAAGATCACGGAGGAGATTGATACCCGAGGACTGGCCAGGAGCGGATTGCAACATGTT  1412

Query  661   CTAG  664
             ||||
Sbjct  1413  CTAG  1416


 Score = 957 bits (518),  Expect = 0.0
 Identities = 528/533 (99%), Gaps = 0/533 (0%)
 Strand=Plus/Plus

Query  776   ATATCGTCCAGAGAAACGATTTCGACAATTTCAACGAGTACAAATTGATCGGCAAGGACT  835
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1417  ATATCGTCCAGAGAAACGATTTCGACAATTTCAACGAGTACAAATTGATCGGCAAGGACT  1476

Query  836   TAGTTCACTGGCGGATCTTCCGCAATTCTACAGTACAAATCCTCGAACAGCACCTAATCA  895
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  1477  TAGTTCACTGGCGGATCTTCCGCAATTCTACAGTACAAATCCTCGAACAGCATCTAATTA  1536

Query  896   ATGTGAACAGACCCTATTGCTCCTTTTTATCAATCACGGAGAAGCGCGATCTAGTGAGAC  955
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1537  ATGTGAACAGACCCTATTGCTCCTTATTATCAATCACGGAGAAGCGCGATCTAGTGAGAC  1596

Query  956   CTCTGAGAAGTATGGTACGGACAAACAGACGTGGGCAGGTAGAGGGGGGATTCTTCTTTG  1015
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1597  CTCTGAGAAGTATGGTACGGACAAACAGACGTGGGCAGATAGAGGGGGGATTCTTCTTTG  1656

Query  1016  AGGCAACTGCCCCGTCGAGTAACATTTCGCCTGCAGTGATGGTGATTTGGTCCAATGAGG  1075
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1657  AGGCAACTGCCCCGTCGAGTAACATTTCGCCTGCAGTGGTGGTGATTTGGTCCAATGAGG  1716

Query  1076  ATTACAGGTCCAATGAGGACTATAAGATATATCTGGAAGACATCGTTGAAAATGAACAGG  1135
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1717  ATTACAGGTCCAATGAGGACTATAAGATATATCTGGAAGACATCGTTGAAAATGAACAGG  1776

Query  1136  ATGACGGCATCTTGTCAGAATTGGAAGACATGGACCAAATCCTGGGATATGACTCAGGTG  1195
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1777  ATGACGGCATCTTGTCAGAATTGGAAGACATGGACCAAATCCTGGGATATGACTCAGGTG  1836

Query  1196  TCACTCTGAGTAAACTACTACAACTCAAATCTGTACTCCGGGATGAACAGTTTGTACGGG  1255
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1837  TCACTCTGAGTAAACTACTACAACTCAAATCTGTACTCCGGGATGAACAGTTTGTACGGG  1896

Query  1256  GATGTGTGGAGTTACATGAGGCACTGGAGAATATTACTCAACATAGATCCTAA  1308
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1897  GATGTGTGGAGTTACATGAGGCACTGGAGAATATTACTCAACATAGATCCTAA  1949



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 62176930772


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5