BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Csinensis_154_v1.fa
           12,574 sequences; 319,231,331 total letters



Query= 
Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

scaffold00085length=522755                                            348     7e-95
scaffold00064length=643170                                            115     8e-25


>scaffold00085 length=522755
Length=522755

 Score = 348 bits (188),  Expect = 7e-95
 Identities = 188/188 (100%), Gaps = 0/188 (0%)
 Strand=Plus/Minus

Query  1      AGGTGGGATACTGGGGCCATGGTGAAACTACCATGTTATATGCAGATTTGCTATTTGGCT  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38239  AGGTGGGATACTGGGGCCATGGTGAAACTACCATGTTATATGCAGATTTGCTATTTGGCT  38180

Query  61     ATGTTCAACTTTGGAAATGACTTGGCATATTATGATCTCAAAATTCATGGCCTGAATTTG  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38179  ATGTTCAACTTTGGAAATGACTTGGCATATTATGATCTCAAAATTCATGGCCTGAATTTG  38120

Query  121    CTGTCCAACATTAAGAATGAGGTCGCTAATAATGTGCTAGGATATTTTGAATTTTTCCTT  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38119  CTGTCCAACATTAAGAATGAGGTCGCTAATAATGTGCTAGGATATTTTGAATTTTTCCTT  38060

Query  181    TTTCTTTA  188
              ||||||||
Sbjct  38059  TTTCTTTA  38052


 Score = 261 bits (141),  Expect = 1e-68
 Identities = 170/184 (92%), Gaps = 1/184 (1%)
 Strand=Plus/Minus

Query  1      AGGTGGGATACTGGGGCCATGGTGAAACTACCATGTTATATGCAGATTTGCTATTTGGCT  60
              |||||| ||| ||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct  41084  AGGTGGAATATTGGGGCCATGGAGAAACTGCCATATTATATGCAGATTTGCTATTTGGCT  41025

Query  61     ATGTTCAACTTTGGAAATGACTTGGCATATTATGATCTCAAAATTCATGGCCTGAATTTG  120
              |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct  41024  ATGTTCAACTTTGGAAATGACTTGGCATATGATGTTCTCAAAAATCATGGCCTGAATTTG  40965

Query  121    CTGTCCAACATTAAGAATGAGGTCGCTAATAATGTGCTAGGATATTTTGAATTTTTCCTT  180
              |||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct  40964  CTGTCTTACATTAAGAATGAGGTCGCTAATAATATGCTAGGACATTTTGAATTTTTCATT  40905

Query  181    -TTT  183
               |||
Sbjct  40904  CTTT  40901


>scaffold00064 length=643170
Length=643170

 Score = 115 bits (62),  Expect = 8e-25
 Identities = 97/114 (85%), Gaps = 1/114 (1%)
 Strand=Plus/Plus

Query  37      TATATGCAGATTTGCTATTTGGCTATGTTCAACTTTGGAAATGACTTGGCATATTATGAT  96
               ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||| ||| |
Sbjct  625856  TATATGCAGATTTGCTACTTGGCCATGTTTAACTTTGGAAATGAGTTGGCATATGATGTT  625915

Query  97      CTCAAAATTCATGGCCTGAATTTGCTGTCCAACATTAAGAATGAGGTC-GCTAA  149
                | |||||||||||||| |||   || ||| |||||||||| |||||  |||||
Sbjct  625916  ATGAAAATTCATGGCCTCAATACTCTATCCTACATTAAGAAAGAGGTGAGCTAA  625969



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 51983467903


  Database: Csinensis_154_v1.fa
    Posted date:  Jul 13, 2015  4:43 PM
  Number of letters in database: 319,231,331
  Number of sequences in database:  12,574



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5