BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= 1

Length=2133
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM005270.1.1Neuroligin (AHRD V3.11 *-* tr|B0WXM8|B0WXM8_CULQU...  1027    0.0  
DcitrM100025.1.1Neuroligin (AHRD V3.11 *** tr|W5JRC0|W5JRC0_ANODA...  117     4e-25


>DcitrM005270.1.1 Neuroligin (AHRD V3.11 *-* tr|B0WXM8|B0WXM8_CULQU). Similar to 
MCOT11687.0.MT XP_017301470.1. AED 0.00
Length=1313

 Score = 1027 bits (556),  Expect = 0.0
 Identities = 570/577 (99%), Gaps = 0/577 (0%)
 Strand=Plus/Plus

Query  1557  ACAGGAGGATGGGTTTGCCGCCTATTCTACCGCACTCAGCGTCACCGTGGCCATTGGTTG  1616
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ACAGGAGGATGGGTTTGCCGCCTATTCTACCGCACTCAGCGTCACCGTGGCCATTGGTTG  60

Query  1617  TTCCCTGTTGATTCTGAACGTCCTGATATTCGCCGGCGTGTATTATCAGCGGGATAAATC  1676
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    TTCCCTGTTGATTCTGAACGTCCTGATATTCGCCGGCGTGTATTATCAGCGGGATAAATC  120

Query  1677  CCGTCAGGGCGGCTCAGGTCACCAGGACTCGGCGGGCAGTATACATAGCAACACGAGCTC  1736
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   CCGTCAGGGCGGCTCAGGTCACCAGGACTCGGCGGGCAGTATACATAGCAACACGAGCTC  180

Query  1737  TAATGGGAGTCAGAACGGGGCGGGTATGATCAAGCAGCGCCGCCAGGAGAACGGTGGACC  1796
             || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  181   TACTGGGAGTCAGAACGGGGCGGGTATGATCAAGCAGCGCCGCCAGGAGAACGGGGGACC  240

Query  1797  TATGTCTAATATTAGTGCAGACTACCTCTATGTTTCAGGCGCCCCGGAGCTGCTTCAGAT  1856
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241   TATGTCTAATATTAGTGCAGACTACCTCTATGTTTCAGGCGCCCCGGAGCTGCTTCAGAT  300

Query  1857  CGTCGAAACCTCCCGCTCCTCCCCCCGCAGCGGGGGCGGCACGGGGCCCTCCATTCTCAA  1916
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   CGTCGAAACCTCCCGCTCCTCCCCCCGCAGCGGGGGCGGCACGGGGCCCTCCATTCTCAA  360

Query  1917  AAAGCCGCCCCTCGAAAACAGTTCCATCCTGGTCCTTCAACCGCCGCACCGGTATCCTCC  1976
             |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct  361   AAAGCCGCCCCTCGAAAACAGTTCCATCCTGGTCCTTTTACCGCCGCACCGGTATCCTCC  420

Query  1977  CATCGAGTTCCAGGACGTCAAGATATCCTGCAGTGCGACTTTGCCGCGCGCGCCGCCCCC  2036
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  421   CATCGAGTTCCAGGACGTGAAGATATCCTGCAGTGCGACTTTGCCGCGCGCGCCGCCCCC  480

Query  2037  TCCCCGTTTGCCCGAGTCACAACCGCTCCTGTCGGGGGGCGGCACACTGGGCCGGTACAA  2096
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   TCCCCGTTTGCCCGAGTCACAACCGCTCCTGTCGGGGGGCGGCACACTGGGCCGGTACAA  540

Query  2097  ACCGCAGCACAAGACCATTGACGAGCTGAAAGTGTGA  2133
             ||||||||||||||||||||||||  |||||||||||
Sbjct  541   ACCGCAGCACAAGACCATTGACGAATTGAAAGTGTGA  577


>DcitrM100025.1.1 Neuroligin (AHRD V3.11 *** tr|W5JRC0|W5JRC0_ANODA). Similar to 
MCOT21339.0.CT. AED 0.20| InterPro:IPR002018,Pfam:PF00135
Length=2990

 Score = 117 bits (63),  Expect = 4e-25
 Identities = 181/238 (76%), Gaps = 7/238 (3%)
 Strand=Plus/Plus

Query  16   AACTACGGGCTGATGGACCAAATAGCGGCCCTCCATTGGATCCAGGAGAACATAGGGTAC  75
            |||||||||||||||||||||||||||||| |||||||| | ||| |||| || |     
Sbjct  82   AACTACGGGCTGATGGACCAAATAGCGGCCTTCCATTGGGTGCAGCAGAATATCGCCCTG  141

Query  76   TTCAATGGGGACCCGTCCAATGTGACCCTGGTGGGGCATGGAACAGGCGCGGCCTGCGTC  135
            ||    || ||||||   ||||||||| || |||| || || || || ||||||||| | 
Sbjct  142  TTTGGCGGCGACCCGGGAAATGTGACCATGATGGGACACGGTACGGGGGCGGCCTGCATT  201

Query  136  AACTTCCTCATGATTTCGCCCGCCGTGCCTGATGGGCTCCTGTTTCACCGCGCCATCCTC  195
            ||||||||||||||||||||| |||||  ||   || || |||| |||   ||| |||| 
Sbjct  202  AACTTCCTCATGATTTCGCCCACCGTGA-TGCCTGG-TC-TGTTCCACAAGGCCGTCCTA  258

Query  196  ATGTCAGGCTCGGCGCTC-AGTCCGTGGGCCTTGGTTCGA-GACCCGGCCCGCTACGC  251
             |||| ||||| || |||   ||| |||||| |||| ||| || |||| || || |||
Sbjct  259  TTGTCCGGCTCTGCCCTCTCATCC-TGGGCCCTGGT-CGAGGATCCGGTCCACTTCGC  314


 Score = 93.5 bits (50),  Expect = 8e-18
 Identities = 116/149 (78%), Gaps = 0/149 (0%)
 Strand=Plus/Plus

Query  943   CATGGAGAGGAACTGCCCTATCTGTTCGGGGCACCCTTGGTGGGAGGGGTCAACCATTTC  1002
             ||||| |||||  |||||||  | ||||| || ||| || | |  ||| ||| |||||||
Sbjct  1057  CATGGTGAGGAGTTGCCCTACATATTCGGTGCCCCCCTGATCGATGGGTTCAGCCATTTC  1116

Query  1003  CCCCGCAACTTCACCAAGTCTGAAATCCTCCTGAGTGAAGCCACCATGATCTATTTCAGC  1062
             ||||| |||||||||||||||||  |   |||||||||||||  |||  ||||  | |||
Sbjct  1117  CCCCGGAACTTCACCAAGTCTGAGGTTGCCCTGAGTGAAGCCTTCATACTCTACCTGAGC  1176

Query  1063  AACTTCGCCAGAACTGGGAACCCTAACGA  1091
             ||||| ||  |||| |||||||| |||||
Sbjct  1177  AACTTTGCGCGAACAGGGAACCCGAACGA  1205



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 102189386222


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5