BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM083525.1.1U3 small nucleolar RNA-associated protein 14-like...  117     1e-25


>DcitrM083525.1.1 U3 small nucleolar RNA-associated protein 14-like protein A (AHRD 
V3.11 *-* tr|A0A067RJT3|A0A067RJT3_ZOONE). Similar to MCOT18967.0.CO. 
AED 0.17
Length=2117

 Score = 117 bits (63),  Expect = 1e-25
 Identities = 73/78 (94%), Gaps = 0/78 (0%)
 Strand=Plus/Minus

Query  45   CTTTGAGGGTTTCAGTTTTCAATTTAGTTTAGGGCTATGGGGGAAATGTATTTCCTAAAC  104
            |||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||
Sbjct  78   CTTTGAGGGTTTCAGTTTTCAATTTAGTTTAGTGCTATGTGTGAGATGTATTTCCTAAAC  19

Query  105  TTGTTCTATTTAAATTTA  122
            |||||||||||| |||||
Sbjct  18   TTGTTCTATTTAGATTTA  1



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 27902011850


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5