BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Diaci_v2.0.ref.fasta 1,906 sequences; 498,892,910 total letters Query= Untitled_sequence Length=1158 Score E Sequences producing significant alignments: (Bits) Value ScVcwli_3598 418 6e-115 ScVcwli_3678 305 5e-81 >ScVcwli_3598 Length=1960604 Score = 418 bits (226), Expect = 6e-115 Identities = 236/241 (98%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 158 GGTACCAATACCCCCCAATGCATCCCCTCTGGTACCAAGCTCTCGGTCTCACTATGATCT 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475315 GGTACCAATACCCCCCAATGCATCCCCTCTGGTACCAAGCTCTCGGTCTCACTATGATCT 475256 Query 218 GCCTCGGCACCATGTCTATGGTTGGTAACGGTATTGTTGTCTACATTTTCCTGTGCACCA 277 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 475255 GCCTCGGCACCATGTCTATGGTTGGTAACGGTATTGTTGTCTACATTTTCCTGTGTACCA 475196 Query 278 AGAACCTCCGCACGCCGTCCAACATTCTGGTAGTCAATTTGGCCTTCTCCGACTTCTGTA 337 |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 475195 AGAACCTCCGGACGCCGTCCAACATTCTGGTAGTCAATTTGGCCTTCTCTGATTTCTGTA 475136 Query 338 TGATGTTCTCCATGGCCCCTACGATGGTTCTAAACTGCTTCTATGAGACTTGGACATTGG 397 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 475135 TGATGTTCTCCATGGCCCCCACGATGGTTCTAAACTGCTTCTATGAGACTTGGACATTGG 475076 Query 398 G 398 | Sbjct 475075 G 475075 Score = 375 bits (203), Expect = 4e-102 Identities = 211/215 (98%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 397 GGACCGTTCATGTGTGAGCTGTACGGGATGCTCGGGTCTCTATTCGGTTGTACGTCCATC 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474553 GGACCGTTCATGTGTGAGCTGTACGGGATGCTCGGGTCTCTATTCGGTTGTACGTCCATC 474494 Query 457 TGGTCTATGGTGATGATCGCTTTCGACCGATACACCGTGATAGTGAAGGGCATAACCGCC 516 ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 474493 TGGTCCATGGTGATGATAGCTTTCGACCGATACACCGTGATTGTGAAGGGCATAACCGCC 474434 Query 517 AAACCCATGACCATTGGGGGGGCACTCCTTCGGCTGATGTTTGTCTGGGTGCACGCGCTC 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474433 AAACCCATGACCATTGGGGGGGCACTCCTTCGGCTGATGTTTGTCTGGGTGCACGCGCTC 474374 Query 577 CTGTGGACCCTCTTCCCCTTCTTCGGCTGGAACAG 611 |||||||||||||| |||||||||||||||||||| Sbjct 474373 CTGTGGACCCTCTTTCCCTTCTTCGGCTGGAACAG 474339 Score = 307 bits (166), Expect = 1e-81 Identities = 168/169 (99%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 869 AGGTGGCGCTCATGACCATCTCCCTCTGGTTCCTGGCATGGACTCCGTATTTAGTGATCA 928 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 470972 AGGTGGCGCTCATGACCATCTCCCTCTGGTTCCTGGCATGGACTCCGTATTTGGTGATCA 470913 Query 929 ACTTCGGTGGTATCCTGGAAATGGTTGAGATCAATCCTCTGATCACCATCTGGGGATCGG 988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470912 ACTTCGGTGGTATCCTGGAAATGGTTGAGATCAATCCTCTGATCACCATCTGGGGATCGG 470853 Query 989 TATTCGCTAAGGCCAACGCTGTCTACAACCCGATCGTGTATGCCATCAG 1037 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470852 TATTCGCTAAGGCCAACGCTGTCTACAACCCGATCGTGTATGCCATCAG 470804 Score = 287 bits (155), Expect = 2e-75 Identities = 159/161 (99%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476054 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 475995 Query 61 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475994 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 475935 Query 121 GCCCTTCCTGAGATGCTACCCATGATAGACCCCCATTGGTA 161 ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 475934 GCCCTTCCTGAAATGCTACCCATGATAGACCCCCACTGGTA 475894 Score = 278 bits (150), Expect = 1e-72 Identities = 150/150 (100%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 609 CAGATACGTACCAGAGGGCAACCTGACCGCCTGTGGTACCGACTACCTGACCAAGGACTG 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471873 CAGATACGTACCAGAGGGCAACCTGACCGCCTGTGGTACCGACTACCTGACCAAGGACTG 471814 Query 669 GCATCATCGTAGCTACCTCATCTTCTACGGATTCTTCGTCTACTTTGTCCCCCTCATTCT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471813 GCATCATCGTAGCTACCTCATCTTCTACGGATTCTTCGTCTACTTTGTCCCCCTCATTCT 471754 Query 729 GATCATCTATGCTTACTACTTCATTGTGCG 758 |||||||||||||||||||||||||||||| Sbjct 471753 GATCATCTATGCTTACTACTTCATTGTGCG 471724 Score = 224 bits (121), Expect = 1e-56 Identities = 123/124 (99%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 1035 CAGTCATCCGAAATTCCGTCAAGCGTTGGACAAGAAATTCCCGTCCCTCGTGTGCGGGAC 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469481 CAGTCATCCGAAATTCCGTCAAGCGTTGGACAAGAAATTCCCGTCCCTCGTGTGCGGGAC 469422 Query 1095 CGTGGAAAGCGACTCCTCCTCTGCCGCCTCCGTTCAGACCAACGTCACCGACGACAAAGC 1154 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 469421 CGTGGAAAGCGACTCCTCCTCTGCCGCCTCCGTTCAAACCAACGTCACCGACGACAAAGC 469362 Query 1155 CTAA 1158 |||| Sbjct 469361 CTAA 469358 Score = 198 bits (107), Expect = 9e-49 Identities = 111/113 (98%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 760 GCTGTATCTGTTCACGAGAAACAAATGAGAGAGCAGGCTAAGAAGATGAACGTGGCAACC 819 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 471451 GCTGTATCTGTTCACGAGAAACAAATGAGGGAGCAGGCTAAGAAGATGAACGTGGCAACC 471392 Query 820 CTGCGATCCGGAGATCAGTCTGGCACCAGCGCGGAAATCAAACTGGCTAAGGT 872 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 471391 CTGCGATCCGGAGATCAGTCTGGCACCAGCGCAGAAATCAAACTGGCTAAGGT 471339 >ScVcwli_3678 Length=540514 Score = 305 bits (165), Expect = 5e-81 Identities = 203/220 (92%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 397 GGACCGTTCATGTGTGAGCTGTACGGGATGCTCGGGTCTCTATTCGGTTGTACGTCCATC 456 ||||||||||||||||||||||||||||||||||| |||| |||||||||||| | || Sbjct 1046 GGACCGTTCATGTGTGAGCTGTACGGGATGCTCGGTTCTCATTTCGGTTGTACGCACGTC 987 Query 457 TGGTCTATGG-TGATGATCGCTTTCGACCGAT-ACACCGTGATAGTGAAGGGCA--TAAC 512 |||||||||| |||| ||||||||||||||| ||| ||||||||||||||||| |||| Sbjct 986 TGGTCTATGGGTGATC-TCGCTTTCGACCGATCACA-CGTGATAGTGAAGGGCAAATAAC 929 Query 513 CGCCAAACCCATGACCATTGGGGGGGCACTCCTTCGGCTGATGTTTGTCTGGGTGCACGC 572 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| Sbjct 928 CGCCAAACCCATGACCATTTGGGGGGCACTCCTTCGGCTGATGTT-GTCTGGGTGAACGC 870 Query 573 GCTCCT-GTGGACCCTCTTCCCCTTCTTCGGCTGGAACAG 611 |||||| ||||||||||||||||||||||||||||||||| Sbjct 869 GCTCCTCGTGGACCCTCTTCCCCTTCTTCGGCTGGAACAG 830 Score = 292 bits (158), Expect = 4e-77 Identities = 160/161 (99%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2329 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 2270 Query 61 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2269 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 2210 Query 121 GCCCTTCCTGAGATGCTACCCATGATAGACCCCCATTGGTA 161 ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2209 GCCCTTCCTGAGATGCTACCCATGATAGACCCCCACTGGTA 2169 Score = 287 bits (155), Expect = 2e-75 Identities = 226/256 (88%), Gaps = 22/256 (9%) Strand=Plus/Minus Query 158 GGTACCAATACCCCCCAATGCATCCCCTCTGGTACCAAGCTCTCGGTCTCACTATGATCT 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 GGTACCAATACCCCCCAATGCATCCCCTCTGGTACCAAGCTCTCGGTCTCACTATGATCT 1498 Query 218 GCCTCGGCACC-A---TGTCTATGGTTGGTAACGGTATTGTTGTCTACATT-TTCCTGTG 272 ||||||| ||| | |||| |||||||||||||| ||||||||||||||| |||||||| Sbjct 1497 GCCTCGGTACCTAAAATGTC-ATGGTTGGTAACGGCATTGTTGTCTACATTATTCCTGTG 1439 Query 273 CACCAAGAACCTCCGC-ACG--CCGTCCA-A-CAT-TCTGGTAGTCAATTTGGCCTTCTC 326 |||||||||||||| ||| ||||||| | ||| |||||||||| ||||||||||||| Sbjct 1438 TACCAAGAACCTCCGGGACGTGCCGTCCACAACATCTCTGGTAGTC-ATTTGGCCTTCTC 1380 Query 327 CGA-C--TT-CTGTA-TGATGTTCTCCATGGCCCCTACGATGGTTCTAAACTGCTTCTAT 381 ||| | || ||||| |||| ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 1379 CGAGCGATTTCTGTAATGAT-TTCTCGATGGCTCC-ACGATGGTTCTGAACTGCTTATAT 1322 Query 382 GAGACTTGGACATTGG 397 |||||| |||| |||| Sbjct 1321 GAGACT-GGAC-TTGG 1308 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 563688682460 Database: Diaci_v2.0.ref.fasta Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 498,892,910 Number of sequences in database: 1,906 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5