BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_cds.fa
           25,292 sequences; 34,155,564 total letters



Query= 324165

Length=1695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrC046790.1.1Voltage-dependent T-type calcium channel subunit ...  1037    0.0  


>DcitrC046790.1.1 Voltage-dependent T-type calcium channel subunit alpha-1G (AHRD 
V3.11 *-* tr|F4WXT5|F4WXT5_ACREC). Similar to MCOT17228.0.CT. 
AED 0.09
Length=696

 Score = 1037 bits (561),  Expect = 0.0
 Identities = 567/570 (99%), Gaps = 0/570 (0%)
 Strand=Plus/Plus

Query  1126  ATGTCGCAGTGTTGCAGCGACGATGTGTACAGTTCTTGTTCCTATTCTGAAAACAGCGAC  1185
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATGTCGCAGTGTTGCAGCGACGATGTGTACAGTTCTTGTTCCTATTCTGAAAACAGCGAC  60

Query  1186  AGCTATGTTCAGGATGTCGAATGCATTCGACAGATCAAAGATAACGGCGAGAAAGAGAGA  1245
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    AGCTATGTTCAGGATGTCGAATGCATTCGACAGATCAAAGATAACGGCGAGAAAGAGAGA  120

Query  1246  CTTTCCCGAGTCAAATGCAAACAGAAATGCAATCTACATAAAGACAGTGACCTAGTGTGT  1305
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   CTTTCCCGAGTCAAATGCAAACAGAAATGCAATCTACATAAAGACAGTGACCTAGTGTGT  180

Query  1306  CAGGCGCCACCTATAATCACTCACACAGCTGCTACTCCTCAGGATAGTCCCAATGGCACT  1365
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   CAGGCGCCACCTATAATCACTCACACAGCTGCTACTCCTCAGGATAGTCCCAATGGCACT  240

Query  1366  CTAGAGCGACAGCATCACCACAACAAACTGTCCCTGTATCAGTATCCCAGCAATCTGTCC  1425
             ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  241   CTAGAGCGACAGCATCACCACAACAAACTGTCCCTATATCAGTACCCCAGCAATCTGTCC  300

Query  1426  ATAGAATCCATTGATAACTCCGTCTCTTCCCAGAACAGTACTGGTCCAGGACTGCTCAGG  1485
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   ATAGAATCCATTGATAACTCCGTCTCTTCCCAGAACAGTACTGGTCCAGGACTGCTCAGG  360

Query  1486  CCTCCTCAACTTGTTACCACCAACACGGGGACTGCCAGTAACAACAGTCTGAATGTAACC  1545
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   CCTCCTCAACTTGTTACCACCAACACGGGGACTGCCAGTAACAACAGTCTGAATGTAACC  420

Query  1546  AACACGGGGAACCAATCAGGTGTCGCGAATAATGGTGGCCATCTTGCTACCAAGAAAGAC  1605
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  421   AACACGGGGAACCAATCCGGTGTCGCGAATAATGGTGGCCATCTTGCTACCAAGAAAGAC  480

Query  1606  CAGTCTAGTTGCACTTCAAAATCCTCGAGAGGCTATTCATTCAAATTGAAGCGCGGCTCC  1665
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   CAGTCTAGTTGCACTTCAAAATCCTCGAGAGGCTATTCATTCAAATTGAAGCGCGGCTCC  540

Query  1666  ACCAAGAAGAGACAGGGACACATCCACCAC  1695
             ||||||||||||||||||||||||||||||
Sbjct  541   ACCAAGAAGAGACAGGGACACATCCACCAC  570



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 55908115268


  Database: Dcitr_OGSv2.0_cds.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 34,155,564
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5