BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_cds.fa 25,292 sequences; 34,155,564 total letters Query= Untitled_sequence Length=1158 Score E Sequences producing significant alignments: (Bits) Value DcitrC099955.1.1Long wavelength opsin gene-RA. (AHRD V3.11 *** Lo... 2050 0.0 DcitrC103585.1.1Opsin-1 (AHRD V3.11 --* sp|Q94741|OPS1_SCHGR). AE... 289 3e-77 >DcitrC099955.1.1 Long wavelength opsin gene-RA. (AHRD V3.11 *** Long wavelength sensitive opsin tr|A0A1P8SFC9|A0A1P8SFC9_EURNO). AED 0.01| InterPro:IPR000276,Pfam:PF00001| GO:0004930,GO:0007186,GO:0016021 Length=1158 Score = 2050 bits (1110), Expect = 0.0 Identities = 1142/1158 (99%), Gaps = 0/1158 (0%) Strand=Plus/Plus Query 1 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 60 Query 61 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 120 Query 121 GCCCTTCCTGAGATGCTACCCATGATAGACCCCCATTGGTACCAATACCCCCCAATGCAT 180 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 GCCCTTCCTGAAATGCTACCCATGATAGACCCCCACTGGTACCAATACCCCCCAATGCAT 180 Query 181 CCCCTCTGGTACCAAGCTCTCGGTCTCACTATGATCTGCCTCGGCACCATGTCTATGGTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCCCTCTGGTACCAAGCTCTCGGTCTCACTATGATCTGCCTCGGCACCATGTCTATGGTT 240 Query 241 GGTAACGGTATTGTTGTCTACATTTTCCTGTGCACCAAGAACCTCCGCACGCCGTCCAAC 300 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 241 GGTAACGGTATTGTTGTCTACATTTTCCTGTGTACCAAGAACCTCCGGACGCCGTCCAAC 300 Query 301 ATTCTGGTAGTCAATTTGGCCTTCTCCGACTTCTGTATGATGTTCTCCATGGCCCCTACG 360 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 301 ATTCTGGTAGTCAATTTGGCCTTCTCTGATTTCTGTATGATGTTCTCCATGGCCCCCACG 360 Query 361 ATGGTTCTAAACTGCTTCTATGAGACTTGGACATTGGGACCGTTCATGTGTGAGCTGTAC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATGGTTCTAAACTGCTTCTATGAGACTTGGACATTGGGACCGTTCATGTGTGAGCTGTAC 420 Query 421 GGGATGCTCGGGTCTCTATTCGGTTGTACGTCCATCTGGTCTATGGTGATGATCGCTTTC 480 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 421 GGGATGCTCGGGTCTCTATTCGGTTGTACGTCCATCTGGTCCATGGTGATGATAGCTTTC 480 Query 481 GACCGATACACCGTGATAGTGAAGGGCATAACCGCCAAACCCATGACCATTGGGGGGGCA 540 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GACCGATACACCGTGATTGTGAAGGGCATAACCGCCAAACCCATGACCATTGGGGGGGCA 540 Query 541 CTCCTTCGGCTGATGTTTGTCTGGGTGCACGCGCTCCTGTGGACCCTCTTCCCCTTCTTC 600 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 CTCCTTCGGCTGATGTTTGTCTGGGTGCACGCGCTCCTGTGGACCCTCTTTCCCTTCTTC 600 Query 601 GGCTGGAACAGATACGTACCAGAGGGCAACCTGACCGCCTGTGGTACCGACTACCTGACC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GGCTGGAACAGATACGTACCAGAGGGCAACCTGACCGCCTGTGGTACCGACTACCTGACC 660 Query 661 AAGGACTGGCATCATCGTAGCTACCTCATCTTCTACGGATTCTTCGTCTACTTTGTCCCC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAGGACTGGCATCATCGTAGCTACCTCATCTTCTACGGATTCTTCGTCTACTTTGTCCCC 720 Query 721 CTCATTCTGATCATCTATGCTTACTACTTCATTGTGCGAGCTGTATCTGTTCACGAGAAA 780 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 721 CTCATTCTGATCATCTATGCTTACTACTTCATTGTGCGGGCTGTATCTGTTCACGAGAAA 780 Query 781 CAAATGAGAGAGCAGGCTAAGAAGATGAACGTGGCAACCCTGCGATCCGGAGATCAGTCT 840 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CAAATGAGGGAGCAGGCTAAGAAGATGAACGTGGCAACCCTGCGATCCGGAGATCAGTCT 840 Query 841 GGCACCAGCGCGGAAATCAAACTGGCTAAGGTGGCGCTCATGACCATCTCCCTCTGGTTC 900 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GGCACCAGCGCAGAAATCAAACTGGCTAAGGTGGCGCTCATGACCATCTCCCTCTGGTTC 900 Query 901 CTGGCATGGACTCCGTATTTAGTGATCAACTTCGGTGGTATCCTGGAAATGGTTGAGATC 960 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 901 CTGGCATGGACTCCGTATTTGGTGATCAACTTCGGTGGTATCCTGGAAATGGTTGAGATC 960 Query 961 AATCCTCTGATCACCATCTGGGGATCGGTATTCGCTAAGGCCAACGCTGTCTACAACCCG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AATCCTCTGATCACCATCTGGGGATCGGTATTCGCTAAGGCCAACGCTGTCTACAACCCG 1020 Query 1021 ATCGTGTATGCCATCAGTCATCCGAAATTCCGTCAAGCGTTGGACAAGAAATTCCCGTCC 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ATCGTGTATGCCATCAGTCATCCGAAATTCCGTCAAGCGTTGGACAAGAAATTCCCGTCC 1080 Query 1081 CTCGTGTGCGGGACCGTGGAAAGCGACTCCTCCTCTGCCGCCTCCGTTCAGACCAACGTC 1140 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1081 CTCGTGTGCGGGACCGTGGAAAGCGACTCCTCCTCTGCCGCCTCCGTTCAAACCAACGTC 1140 Query 1141 ACCGACGACAAAGCCTAA 1158 |||||||||||||||||| Sbjct 1141 ACCGACGACAAAGCCTAA 1158 >DcitrC103585.1.1 Opsin-1 (AHRD V3.11 --* sp|Q94741|OPS1_SCHGR). AED 0.29 Length=201 Score = 289 bits (156), Expect = 3e-77 Identities = 161/163 (99%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 1 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 ATGTCTCCTAATTTATTCGGCCCCAGTTTCGAAGCCTACGCCGGCCGTTTTGGGCAGCAA 87 Query 61 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 CATAATGTGGCGGCCGGCGGCCCTTTTGGCGGCTTCGGTAATGCTACCGTGGTGGACAAG 147 Query 121 GCCCTTCCTGAGATGCTACCCATGATAGACCCCCATTGGTACC 163 ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 148 GCCCTTCCTGAGATGCTACCCATGATAGACCCCCACTGG-ACC 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37981858112 Database: Dcitr_OGSv2.0_cds.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 34,155,564 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5