BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08...  593     2e-169
DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29...  289     1e-77 


>DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). 
AED 0.01
Length=1863

 Score = 593 bits (321),  Expect = 2e-169
 Identities = 321/321 (100%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  717

Query  61   TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  718  TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  777

Query  121  CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAATCCCTTCTAAACGTGCCAAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  778  CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAATCCCTTCTAAACGTGCCAAA  837

Query  181  ACAAATGCCACACCTGAAGATCTGTCGTCCACTTCAACCATCAATGATTCAATCGCTGCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  838  ACAAATGCCACACCTGAAGATCTGTCGTCCACTTCAACCATCAATGATTCAATCGCTGCT  897

Query  241  AACTACATCAATAAAACCCCCACACCTACACCTCCCATTCCTGATCAAACACCTCCTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  898  AACTACATCAATAAAACCCCCACACCTACACCTCCCATTCCTGATCAAACACCTCCTGCC  957

Query  301  AAGCTTCCTAACTCCAATGCT  321
            |||||||||||||||||||||
Sbjct  958  AAGCTTCCTAACTCCAATGCT  978


>DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). 
Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36
Length=591

 Score = 289 bits (156),  Expect = 1e-77
 Identities = 159/160 (99%), Gaps = 1/160 (1%)
 Strand=Plus/Plus

Query  1    GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  294

Query  61   TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  354

Query  121  CTCAACAATAAACACCTCTCATCTCCTCTTGCTCAT-GAA  159
            |||||||||||||||||||||||||||||||||||| |||
Sbjct  355  CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATAGAA  394



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 14419507410


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5