BLASTP 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Dcitr_OGSv2.0_pep.fa
           25,292 sequences; 11,360,065 total letters



Query= XP_026675810.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrP067105.1.2  Homeobox protein Nkx-2.2a (AHRD V3.11 *** tr|A0...  290     2e-99
DcitrP067105.1.1  Homeobox protein Nkx-2.2a (AHRD V3.11 *** tr|A0...  290     2e-99


>DcitrP067105.1.2 Homeobox protein Nkx-2.2a (AHRD V3.11 *** tr|A0A146M838|A0A146M838_LYGHE). 
Similar to MCOT13526.3.CT. AED 0.04
Length=281

 Score = 290 bits (742),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  92   MKMPTVQARPSGFHICDILDLNDAKVHNNDHDHQSSNLPSSIHSDGTDLHSSRASGLLFP  151
            MKMPTVQARPSGFHICDILDLNDAKVHNNDHDHQSSNLPSSIHSDGTDLHSSRASGLLFP
Sbjct  1    MKMPTVQARPSGFHICDILDLNDAKVHNNDHDHQSSNLPSSIHSDGTDLHSSRASGLLFP  60

Query  152  GNFQAQSEAHAALQHHLATSLTELSGFTGVTSQHQQASPDSTSPSGVTDLTDSSSTHGLG  211
            GNFQAQSEAHAALQHHLATSLTELSGFTGVTSQHQQASPDSTSPSGVTDLTDSSSTHGLG
Sbjct  61   GNFQAQSEAHAALQHHLATSLTELSGFTGVTSQHQQASPDSTSPSGVTDLTDSSSTHGLG  120

Query  212  NDSCLKSSDHRDLSEDGIDEEID  234
            NDSCLKSSDHRDLSEDGIDEEID
Sbjct  121  NDSCLKSSDHRDLSEDGIDEEID  143


>DcitrP067105.1.1 Homeobox protein Nkx-2.2a (AHRD V3.11 *** tr|A0A146M838|A0A146M838_LYGHE). 
Similar to MCOT13526.3.CT. AED 0.06
Length=281

 Score = 290 bits (742),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  92   MKMPTVQARPSGFHICDILDLNDAKVHNNDHDHQSSNLPSSIHSDGTDLHSSRASGLLFP  151
            MKMPTVQARPSGFHICDILDLNDAKVHNNDHDHQSSNLPSSIHSDGTDLHSSRASGLLFP
Sbjct  1    MKMPTVQARPSGFHICDILDLNDAKVHNNDHDHQSSNLPSSIHSDGTDLHSSRASGLLFP  60

Query  152  GNFQAQSEAHAALQHHLATSLTELSGFTGVTSQHQQASPDSTSPSGVTDLTDSSSTHGLG  211
            GNFQAQSEAHAALQHHLATSLTELSGFTGVTSQHQQASPDSTSPSGVTDLTDSSSTHGLG
Sbjct  61   GNFQAQSEAHAALQHHLATSLTELSGFTGVTSQHQQASPDSTSPSGVTDLTDSSSTHGLG  120

Query  212  NDSCLKSSDHRDLSEDGIDEEID  234
            NDSCLKSSDHRDLSEDGIDEEID
Sbjct  121  NDSCLKSSDHRDLSEDGIDEEID  143



Lambda      K        H        a         alpha
   0.313    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1232620554


  Database: Dcitr_OGSv2.0_pep.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 11,360,065
  Number of sequences in database:  25,292



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40