BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= 1254

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c161884/f4p20/2749isoform=c161884;full_length_coverage=4;non_full...  721     0.0  


>c161884/f4p20/2749 isoform=c161884;full_length_coverage=4;non_full_length_coverage=20;isoform_length=2749
Length=2749

 Score = 721 bits (390),  Expect = 0.0
 Identities = 402/408 (99%), Gaps = 0/408 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAGTCGCAATTGCCACCCTCTGCGTCCTGGTCGCAATCCAGCACATCTCTGCGGCC  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  22   ATGAAAGTCGCAATTGCCACCCTCTGCGTCCTGGTCGCAATCCAGCAGATCTCTGCGGCC  81

Query  61   CCACGATTGGATGACCCCTCAGTGGAATCCCTGAGATTCAAACGGTCGCCCAAGCACATC  120
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  82   CCTCGATTGGATGACCCCTCAGTGGAATCCCTGAGATTCAAACGGTCTCCCAAGCACATC  141

Query  121  CACAACTTGTTGTTCGGCGGAGGAGGTCACGAAGGTCACAGAGGAGGTGGTGGAGGTGGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  CACAACTTGTTGTTCGGCGGAGGAGGTCACGAAGGTCACAGAGGAGGTGGTGGAGGTGGT  201

Query  181  AGCTCCTCTGCCGCTGCAGCGGCTGCTAGCAGTGGCGGCTCTTCAGCTTCCGCAGCTGCG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  AGCTCCTCTGCCGCTGCAGCGGCTGCTAGCAGTGGCGGCTCTTCAGCTTCCGCAGCTGCG  261

Query  241  GCATCCAGTTCTTCCCACCAATCAGAGACGTACAAATTCGGCCCATTCCAGGCGTCATTC  300
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct  262  GCATCCAGTTCTTCCCACCAATCAGAGACATACAAATTCGGCCCATTCCAGGCCTCGTTC  321

Query  301  TCATCCGGATCTTCAGCCTCTTCTAGCTCAGCTGGAGGTGGAGCTGGCAGATTCAACGAC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  TCATCCGGATCTTCAGCCTCTTCTAGCTCAGCTGGAGGTGGAGCTGGCAGATTCAACGAC  381

Query  361  TATGGAAGCCGCGGAGGTTTTGGAGATTATGGAGGTGGTTCTCTGTAA  408
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  382  TATGGAAGCCGCGGAGGTTTTGGAGATTATGGAGGTGGTTCTCTGTAA  429



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 28956268039


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5