BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Csinensis_154_v1.1.cds_annot.fasta
           46,147 sequences; 57,446,256 total letters



Query= Untitled_sequence

Length=2520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

orange1.1g047980mchromomethylase 3, similar to AT1G69770.1            150     6e-35


>orange1.1g047980m chromomethylase 3, similar to AT1G69770.1
Length=2157

 Score = 150 bits (81),  Expect = 6e-35
 Identities = 357/492 (73%), Gaps = 12/492 (2%)
 Strand=Plus/Plus

Query  1342  CCAGGAGGTGTTGATGTTGTCTGCGGTGGGCCACCATGCCAAGGAATCAGTGGTCACAAC  1401
             || |||| |||||||||  | || || || || |||||||||||| | |||||   ||| 
Sbjct  1558  CCTGGAGATGTTGATGTGATTTGTGGGGGACCTCCATGCCAAGGAGTTAGTGGATTCAAT  1617

Query  1402  CGCTTCAGGAACTTATTGGACCCTCTAGAAGATCAGAAAAACAAGCAGCTTTTGGTGTAT  1461
             || || ||||||  |    | || || |  ||| | ||||| || |||||  | || |  
Sbjct  1618  CGTTTTAGGAACAAAGATAATCCACTGGCTGATGAAAAAAATAAACAGCTAATTGTTTTC  1677

Query  1462  ATGAACATTGTAGAATATTTGAAGCCTAAGTTCGTTTTGATGGAAAACGTCGTTGACATG  1521
             ||| | || || || | ||||||||||||||| || ||||||||||| || |||||||| 
Sbjct  1678  ATGGATATAGTTGACTTTTTGAAGCCTAAGTTTGTATTGATGGAAAATGTTGTTGACATT  1737

Query  1522  CTGAAG-ATGGCTAAGGGCTATCTTGCACGGTTTGCTGTTGG-ACGCCTTCTACAGATGA  1579
              | |||  || | ||||  || ||||  || | |||  ||||  || ||| | || ||||
Sbjct  1738  GTCAAGTTTGCCAAAGGATTA-CTTGGTCGATATGC-CTTGGCTCGACTTATTCAAATGA  1795

Query  1580  ATTACCAAGTGAGGAATGGAATGATGGCAGCTGGAGCTTATGGGCTTGCTCAGTTTCGTT  1639
             ||||||||||  |||  |||||||||||||| || || ||||| ||| | || |||||| 
Sbjct  1796  ATTACCAAGTTCGGATGGGAATGATGGCAGCAGGGGCATATGGACTTCCCCAATTTCGTA  1855

Query  1640  TGAGGTTCTTTCTATGGGGTGCACTCCCTAGTGAGATAATT-CCGCAGTTCCCACTTCCA  1698
             || || ||||  | ||||| || |  |||| ||||| |||| || |  |   ||||||||
Sbjct  1856  TGCGGGTCTTCTTGTGGGGAGCCCAACCTACTGAGA-AATTGCCTCCTTATGCACTTCCA  1914

Query  1699  ACACATGATCTAGTTCATAGAGGAAATATTGTCAAG-GAGTTTCAGGGAAACATAGTAGC  1757
             ||||||||| | |||   |||||   |||   |||  |||||| |  ||||||  || ||
Sbjct  1915  ACACATGATGTTGTTTTGAGAGGGGTTATCC-CAACCGAGTTTGAAAGAAACACCGTTGC  1973

Query  1758  CTATGATGAAGGACATACT-GTGAAGTTAGCA-GACAAGCTTTTGTTGAAGGATGTGATT  1815
              ||||||||||| || ||  |   |||||||| || |||||| ||||  ||||||  |||
Sbjct  1974  ATATGATGAAGGTCA-ACAAGCAGAGTTAGCAAGA-AAGCTTCTGTTACAGGATGCAATT  2031

Query  1816  TCTGATCTTCCT  1827
             ||||| ||||||
Sbjct  2032  TCTGACCTTCCT  2043


 Score = 80.5 bits (43),  Expect = 8e-14
 Identities = 161/218 (74%), Gaps = 8/218 (4%)
 Strand=Plus/Plus

Query  823   TACTCCGGCTGTGGAGCTATGTCGACAGGGTTGTGCATGGGTGCACAACTGTCTGGTTTG  882
             ||||| || ||||| || ||||| |||||  | ||| | |||||| |  || ||||||||
Sbjct  1033  TACTCTGGTTGTGGTGCAATGTCAACAGGACTTTGCCTTGGTGCAAATTTGGCTGGTTTG  1092

Query  883   AACCTCGTCACTAAATGGGCTGTTGACATGAATGCACATGCATGTAAAAGCTTGCAGCAT  942
             || || || || | ||||||||||||||| ||||   |||| ||| ||||  |  ||   
Sbjct  1093  AATCTTGTTACGAGATGGGCTGTTGACATTAATGAGTATGCTTGTCAAAGTCTAAAGTTG  1152

Query  943   AACCACCCAGAGACAAACGTGAGAAACATGAC-C-GCAGAAGATTT-CTTGTTTCTGCTT  999
             ||||| || |||||| | || |||||  |||  | || |||||||| ||    | || ||
Sbjct  1153  AACCATCCCGAGACAGAGGTAAGAAA--TGAATCAGCTGAAGATTTTCTCACCT-TG-TT  1208

Query  1000  AAG-GAGTGGGAGAAGCTATGCATTCATTTCTCTTTGA  1036
             ||| || ||||| || || ||||||  |||||||||||
Sbjct  1209  AAGAGAATGGGAAAAACTTTGCATTAGTTTCTCTTTGA  1246



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 140107315491


  Database: Csinensis_154_v1.1.cds_annot.fasta
    Posted date:  Jul 15, 2015 12:57 PM
  Number of letters in database: 57,446,256
  Number of sequences in database:  46,147



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5