BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitri_transcriptome.fasta
           60,261 sequences; 104,618,276 total letters



Query= DC06G037760.1

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcDTr03354.2Splicing factor U2AF subunit                              1175    0.0  


>DcDTr03354.2 Splicing factor U2AF subunit
Length=2463

 Score = 1175 bits (636),  Expect = 0.0
 Identities = 638/639 (99%), Gaps = 0/639 (0%)
 Strand=Plus/Plus

Query  10    ATGACAACAAAGAGCTTCCGAAACAAAATCGGAGTTACAATGTTGGATCTAAGATTATTC  69
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  515   ATGACAACAAAGAGCTTCCGAAACAAAATCGGAGTTACAATGTTGGATCTAAGATTATTC  574

Query  70    GTGAAAATCTCGGCGTATATCGGCGCGATCCTATTGGTCAAACACAGTCTCACTACGGTT  129
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  575   GTGAAAATCTCGGCGTATATCGGCGCGATCCTATTGGTCAAACACAGTCTCACTACGGTT  634

Query  130   GTGTTTCCACTCGATGATGAAGATGAGGAAGGTCGACAAATCAGAGGTTCCCTGTTCGTT  189
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  635   GTGTTTCCACTCGATGATGAAGATGAGGAAGGTCGACAAATCAGAGGTTCCCTGTTCGTT  694

Query  190   TCCAGTGTGGTGTATATATTTTTCAGGTTCTGCAGAACTCAGTTTTGGGATAACCTATGT  249
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  695   TCCAGTGTGGTGTATATATTTTTCAGGTTCTGCAGAACTCAGTTTTGGGATAACCTATGT  754

Query  250   CTCCTTACACATGTCTTGTACTCATACTCAGCCGGCACTCTAGTTTGGTTCCTACTCACT  309
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  755   CTCCTTACACATGTCTTGTACTCATACTCAGCCGGCACTCTAGTTTGGTTCCTACTCACT  814

Query  310   CACACTGTGTTCCTATTGGAGGAAAAATGCACCTATGGGAAGCATCCGTTCTACAGTCAA  369
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815   CACACTGTGTTCCTATTGGAGGAAAAATGCACCTATGGGAAGCATCCGTTCTACAGTCAA  874

Query  370   CTATCCAATGAGAGGACTCTGCAGTATGAAGCTTTGTTTGTTGTCCTATGTGTGATCACG  429
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  875   CTATCCAATGAGAGGACTCTGCAGTATGAAGCTTTGTTTGTTGTCCTATGTGTGATCACG  934

Query  430   TCACTCCTAGTGTGGGTTATTAAACCAAGATCAGTAAGATCGGTGGAGGTGACGAAGAGC  489
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  935   TCACTCCTAGTGTGGGTTATTAAACCAAGATCAGTAAGATCGGTGGAGGTGACGAAGAGC  994

Query  490   AGAACAGAAAATATTCTATGCACCGAATACTGGAAACACCAAGACATGGAGATCATTAGA  549
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  995   AGAACAGAAAATATTCTATGCACCGAATACTGGAAACACCAAGACATGGAGATTATTAGA  1054

Query  550   AGGGTGGCTTTTTCTCAACCTAAACCATTAGGACGACTGGAGAACTTTATGGAAACACCA  609
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1055  AGGGTGGCTTTTTCTCAACCTAAACCATTAGGACGACTGGAGAACTTTATGGAAACACCA  1114

Query  610   GCCATATTTGGTCGAAATCAACTATCTCAACTGACGTGA  648
             |||||||||||||||||||||||||||||||||||||||
Sbjct  1115  GCCATATTTGGTCGAAATCAACTATCTCAACTGACGTGA  1153



Lambda      K        H
    1.34    0.623     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 64098026780


  Database: Dcitri_transcriptome.fasta
    Posted date:  Apr 30, 2019 10:57 AM
  Number of letters in database: 104,618,276
  Number of sequences in database:  60,261



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5