BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= NODE_6494

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c94900/f6p4/1375isoform=c94900;full_length_coverage=6;non_full_le...  907     0.0  
c55696/f3p12/1322isoform=c55696;full_length_coverage=3;non_full_l...  904     0.0  


>c94900/f6p4/1375 isoform=c94900;full_length_coverage=6;non_full_length_coverage=4;isoform_length=1375
Length=1375

 Score = 907 bits (491),  Expect = 0.0
 Identities = 496/498 (99%), Gaps = 1/498 (0%)
 Strand=Plus/Plus

Query  14   ATGGATAGATCTAGTCACGCGGTAGTTCTACTTGTGTTCGCTTCCTGTGGCGTATTTTCA  73
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  19   ATGGATAGATCTAGTCACGC-GTAGTTCTACTTGTGTTCGCTTCCTGTGGCGTATTTTCA  77

Query  74   TACGCACAGTTGATAGACAGTCGCCAAGCGGTGCCAGGATGGACTGAGAACTGTATCACA  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   TACGCACAGTTGATAGACAGTCGCCAAGCGGTGCCAGGATGGACTGAGAACTGTATCACA  137

Query  134  TGTATTTGTGAAGCCTCCTCAGGATGTAATGAAACCATTGGGTGTATAGATGGCAACTAT  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  138  TGTATTTGTGAAGCCTCCTCAGGATGTAATGAAACCATTGGGTGTATAGATGGCAACTAT  197

Query  194  TGTGGTATGTTCCTCATAGGGGATGAATATTGGCGAGATGCAGAGTCCCCTGTGCTGGAT  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  198  TGTGGTATGTTCCTCATAGGGGATGAATATTGGCGAGATGCAGAGTCCCCTGTGCTGGAT  257

Query  254  GGAGATGACCCATCCGATCCTGGAGCATTTCAAAGATGTGCACTGGATCCATTTTGTGCG  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  GGAGATGACCCATCCGATCCTGGAGCATTTCAAAGATGTGCACTGGATCCATTTTGTGCG  317

Query  314  TCGAAAGCCGTCAATCGTTACATTCAAAAGTTCGCCCAGGACTGTAACCGAGATCGGCGT  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  TCGAAAGCCGTCAATCGTTACATTCAAAAGTTCGCCCAGGACTGTAACCGAGATCGGCGT  377

Query  374  ATCAACTGTGACGACCACGTGAGATTGCATTACCTAGGACAAACACAATGTTCAATACGG  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  ATCAACTGTGACGACCACGTGAGATTGCATTACCTAGGACAAACACAATGTTCAATACGG  437

Query  434  ATCAACCATCTTCCCTACTATCAAACCTTCAGGACTTGCATGAGAGCACTCTCTGCAGAG  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  ATCAACCATCTTCCCTACTATCAAACCTTCAGGACTTGCATGAGAGCACTCTCTGCAGAG  497

Query  494  TCTAGGAAAGGAAACTAG  511
            |||||||| |||||||||
Sbjct  498  TCTAGGAATGGAAACTAG  515


>c55696/f3p12/1322 isoform=c55696;full_length_coverage=3;non_full_length_coverage=12;isoform_length=1322
Length=1322

 Score = 904 bits (489),  Expect = 0.0
 Identities = 495/498 (99%), Gaps = 0/498 (0%)
 Strand=Plus/Plus

Query  14   ATGGATAGATCTAGTCACGCGGTAGTTCTACTTGTGTTCGCTTCCTGTGGCGTATTTTCA  73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  19   ATGGATAGATCTAGTCACGCGGTAGTTCTACTTGTGTTCGCTTCCTGTGGCGTATTTTCA  78

Query  74   TACGCACAGTTGATAGACAGTCGCCAAGCGGTGCCAGGATGGACTGAGAACTGTATCACA  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  79   TACGCACAGTTGATAGACAGTCGCCAAGCGGTGCCAGGATGGACTGAGAACTGTATCACA  138

Query  134  TGTATTTGTGAAGCCTCCTCAGGATGTAATGAAACCATTGGGTGTATAGATGGCAACTAT  193
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  139  TGTATTTGTGAAGCCTCCTCAGGATGTAACGAAACCATTGGGTGTATAGATGGCAACTAT  198

Query  194  TGTGGTATGTTCCTCATAGGGGATGAATATTGGCGAGATGCAGAGTCCCCTGTGCTGGAT  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  TGTGGTATGTTCCTCATAGGGGATGAATATTGGCGAGATGCAGAGTCCCCTGTGCTGGAT  258

Query  254  GGAGATGACCCATCCGATCCTGGAGCATTTCAAAGATGTGCACTGGATCCATTTTGTGCG  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  GGAGATGACCCATCCGATCCTGGAGCATTTCAAAGATGTGCACTGGATCCATTTTGTGCG  318

Query  314  TCGAAAGCCGTCAATCGTTACATTCAAAAGTTCGCCCAGGACTGTAACCGAGATCGGCGT  373
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  TCGAAAGCTGTCAATCGTTACATTCAAAAGTTCGCCCAGGACTGTAACCGAGATCGGCGT  378

Query  374  ATCAACTGTGACGACCACGTGAGATTGCATTACCTAGGACAAACACAATGTTCAATACGG  433
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  379  ATAAACTGTGACGACCACGTGAGATTGCATTACCTAGGACAAACACAATGTTCAATACGG  438

Query  434  ATCAACCATCTTCCCTACTATCAAACCTTCAGGACTTGCATGAGAGCACTCTCTGCAGAG  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  ATCAACCATCTTCCCTACTATCAAACCTTCAGGACTTGCATGAGAGCACTCTCTGCAGAG  498

Query  494  TCTAGGAAAGGAAACTAG  511
            ||||||||||||||||||
Sbjct  499  TCTAGGAAAGGAAACTAG  516



Lambda      K        H
    1.35    0.625     1.14 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 36743462838


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5