BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Csinensis_154_v1.1.protein_primaryTranscriptOnly_annot.fasta
           25,379 sequences; 9,695,389 total letters



Query= Untitled_sequence

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

orange1.1g039013mCLAVATA3/ESR-RELATED 6, similar to AT2G31085.1       52.0    1e-10


>orange1.1g039013m CLAVATA3/ESR-RELATED 6, similar to AT2G31085.1
Length=77

 Score = 52.0 bits (123),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 30/77 (39%), Positives = 47/77 (61%), Gaps = 6/77 (8%)

Query  6   LLLFVMLTFLLVIEMEGRIL----RVNSKTKDGESNDLLKRLGYNVSELKRIGR-ELSVQ  60
           L+LF ++  LL +  + RIL    + N+   + +S  LL+ LG+++++LK   R   ++ 
Sbjct  2   LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIH  61

Query  61  NEVDRFSPPGGPDPQHH  77
            E DR SP GGPDPQHH
Sbjct  62  RESDRVSP-GGPDPQHH  77



Lambda      K        H        a         alpha
   0.317    0.137    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239214794


  Database: Csinensis_154_v1.1.protein_primaryTranscriptOnly_annot.fasta
    Posted date:  Jul 15, 2015  5:35 PM
  Number of letters in database: 9,695,389
  Number of sequences in database:  25,379



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40