BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM041130.1.1Neurocalcin-like protein (AHRD V3.11 *** tr|A0A03...  156     2e-37


>DcitrM041130.1.1 Neurocalcin-like protein (AHRD V3.11 *** tr|A0A034WTZ2|A0A034WTZ2_BACDO). 
Similar to MCOT03790.0.CT XP_017301045.1. AED 0.31
Length=2845

 Score = 156 bits (84),  Expect = 2e-37
 Identities = 330/449 (73%), Gaps = 16/449 (4%)
 Strand=Plus/Minus

Query  8     TATGACAAAAAAAGTTTACGAGATTCTTCAACTTTTCCTTTACATTTTTTGCCCCCTTTT  67
             ||| |||||| |||| ||||||  ||||| ||   ||  | |||| ||||| | || | |
Sbjct  2749  TATCACAAAAGAAGTCTACGAGTGTCTTCTAC--ATCACTCACATATTTTGACTCCATCT  2692

Query  68    TTTCAGGAAAAATTAAAGGGAAATTTTATCAATAGGATTTCAAGGATTTTTCCCTGCCCG  127
             |||||| ||||  ||||| || |||||||||||| |  ||| ||||||||||  || |  
Sbjct  2691  TTTCAGAAAAAGATAAAGTGATATTTTATCAATATGTATTCGAGGATTTTTCATTGTCAT  2632

Query  128   GAGGCCTGGAATCTTTGTTAATTCCAAGTATTGGGGGGGGGTAGGATCTTTTTTTCATAA  187
             |||| |  ||||||||| |||||  ||||  || ||  || ||||||  || ||||||||
Sbjct  2631  GAGGACGTGAATCTTTGATAATTTTAAGT--TGAGGCTGGTTAGGATTCTTATTTCATAA  2574

Query  188   AAAG-CCTAATCACCCAAG-GACCTCATTTTTACATAAATGAATC-CAAAACTTAATTAA  244
              ||| | | || |   ||| ||| |||||||||||  |||||||| |||||| |  | | 
Sbjct  2573  CAAGTCGTTATGA---AAGTGACATCATTTTTACAGTAATGAATCACAAAACAT-GTCAT  2518

Query  245   AAAAAAATCCTAAACCAACCCTGTTTTCCAAAAACCCAAATTTTTCATTGAGGGGGGCTT  304
             ||| ||||  | || ||| | |||| ||  | ||| ||||| |||||||||||| |||| 
Sbjct  2517  AAATAAATTATGAATCAAACATGTTCTCGTACAACACAAATATTTCATTGAGGGAGGCTA  2458

Query  305   TTTGGGGAACCCAAATCCCCCCCAAGGG-GAACTTTCCTTCCCGGGTCTGCAAGGGTGGG  363
             |||| || || | ||||| |  ||| || ||  |||| ||| | |   |||||||| | |
Sbjct  2457  TTTGAGGCACACGAATCCTCTACAAAGGCGACATTTC-TTCTCTGTATTGCAAGGGAGTG  2399

Query  364   CCTCTAAAATTTAAAATTTTTTTTAAAAAACCCAAATCCCAA-AAAAAA-TATCTCGGGG  421
             ||||| ||||||| |  ||| | || |||| |||||||  || |||||| |||  || ||
Sbjct  2398  CCTCTGAAATTTATATATTTATCTAGAAAAGCCAAATCGGAACAAAAAAATATACCGAGG  2339

Query  422   GATTTTCCACTCTGCGAAAAAAAGGAAAA  450
             |||||| |||| |||| | |||| || ||
Sbjct  2338  GATTTTACACT-TGCGGATAAAATGAGAA  2311



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 20682525780


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5