BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Candidatus_Liberibacter_asiaticus_psy62_genome.fasta 1 sequences; 1,227,328 total letters Query= contig_000000000001 Length=458 Score E Sequences producing significant alignments: (Bits) Value gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus ... 841 0.0 >gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus str. psy62 chromosome, complete genome Length=1227328 Score = 841 bits (455), Expect = 0.0 Identities = 457/458 (99%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 1 ATCCGCTCTTGGTAAGGAATTTTTCGTTTCTGTTGGGATGAAATCAACATGTAATGGGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305349 ATCCGCTCTTGGTAAGGAATTTTTCGTTTCTGTTGGGATGAAATCAACATGTAATGGGAA 305290 Query 61 GAATATATCTGTTTCTTCAAATCAAATGAGTGATAGTCTAGCGATTATGGCGAGTGATGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305289 GAATATATCTGTTTCTTCAAATCAAATGAGTGATAGTCTAGCGATTATGGCGAGTGATGT 305230 Query 121 TTCATTAAAGGGATTAGATTCCTATGTTCGCTTCCGGCGACAATCTTCTATATCCTCTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305229 TTCATTAAAGGGATTAGATTCCTATGTTCGCTTCCGGCGACAATCTTCTATATCCTCTTT 305170 Query 181 GTGTTTGCGTATATTAATGATTGCAAGTGGAGAAGTAGATGTCCTTATCGTTGATCGAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305169 GTGTTTGCGTATATTAATGATTGCAAGTGGAGAAGTAGATGTCCTTATCGTTGATCGAAA 305110 Query 241 TGCCAATGATTGGGATCTTGCTGCTGCTGATTTATTGCTTGAGTGTTCTGGTGGTGTGTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 305109 TGCCAATGATTGGGATCTTGCTGCTGCTGATTTATTGCTTGAGTGTTCTGGTGGTGCGTT 305050 Query 301 GGTTGATATAGATAGAAAATTATTGACGTACAATCGTTCTCAAGTAAATCATGAAGTGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305049 GGTTGATATAGATAGAAAATTATTGACGTACAATCGTTCTCAAGTAAATCATGAAGTGTT 304990 Query 361 ATTTGCTTCTGCTAAGTGGCATTTCCCATCTTTTAAGCAACATTTATCAACTTTATAGGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304989 ATTTGCTTCTGCTAAGTGGCATTTCCCATCTTTTAAGCAACATTTATCAACTTTATAGGA 304930 Query 421 TGTGATTGAACAAAATTTTTTGCTTTTAAGGAGTGAAA 458 |||||||||||||||||||||||||||||||||||||| Sbjct 304929 TGTGATTGAACAAAATTTTTTGCTTTTAAGGAGTGAAA 304892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 537560904 Query= contig_000000000002 Length=495 Score E Sequences producing significant alignments: (Bits) Value gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus ... 881 0.0 >gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus str. psy62 chromosome, complete genome Length=1227328 Score = 881 bits (477), Expect = 0.0 Identities = 489/495 (99%), Gaps = 0/495 (0%) Strand=Plus/Plus Query 1 GTTGGGGAATTGATCATAAACGTTGCTTAGAAAATTTAACATTATTGCGTCAACAAACTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611734 GTTGGGGAATTGATCATAAACGTTGCTTAGAAAATTTAACATTATTGCGTCAACAAACTA 611793 Query 61 ATCTACGAGATAGATTCAAGGCGATATATAATAAGCCTTATACATCATCATCGCAAGACG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611794 ATCTACGAGATAGATTCAAGGCGATATATAATAAGCCTTATACATCATCATCGCAAGACG 611853 Query 121 TAGATTCTCAACTATATGATGGAATTTTTGCAGATGTAGACCGTCAAATAATGGATCGTA 180 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 611854 TAGATTCTCAACTATATGATGGTTTTTTTGCAGATGTAGACCGTCAAATAATGGATCGTA 611913 Query 181 TACTACGTACTCCACCGGAACAATTATCAACGTTAATTCTGCCATTCAGTGATCGGCGAT 240 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 611914 TACTTCGTACTGCACCGGAACAATTATCAACGTTAAATCTGCCATTCAGTGATCGGCGAT 611973 Query 241 TGCCTGAATTATTCTTTCGTTATAGAGCGCGCAATTTTCCCCATACACTATGTGAAAAAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 611974 TGCCTGAATTATTCTTTCGTTATAGAGCGCGCAATTTTCCCCATACACTAAGTGAAAAAG 612033 Query 301 AGAAACAAGATTGGTTAGAGCATCGCAAGAAAATGCTCACGCGGTCTCGCATTGAAGAGT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612034 AGAAACAAGATTGGTTAGAGCATCGCAAGAAAATGCTCACGCGGTCTCGCATTGAAGAGT 612093 Query 361 ATAAAAATAAACTACAGAGTCTCAGTGGCGAATACAAAGGAGACGAAGGAAAAGAAGGGC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612094 ATAAAAATAAACTACAGAGTCTCAGTGGCGAATACAAAGGAGACGAAGGAAAAGAAGGGC 612153 Query 421 TAATTAATGCGTTGTACGAATATCTTCAATGGGTTATTCCGAAGGAATAACAATTTTGTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612154 TAATTAATGCGTTGTACGAATATCTTCAATGGGTTATTCCGAAGGAATAACAATTTTGTC 612213 Query 481 TTGTGAAAACGAAAT 495 ||||||||||||||| Sbjct 612214 TTGTGAAAACGAAAT 612228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 582971300 Query= contig_000000000003 Length=378 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 439376264 Query= contig_000000000004 Length=1058 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 1272717359 Query= contig_000000000049 Length=1883 Score E Sequences producing significant alignments: (Bits) Value gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus ... 808 0.0 >gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus str. psy62 chromosome, complete genome Length=1227328 Score = 808 bits (437), Expect = 0.0 Identities = 437/437 (100%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 778 TCAAAGGATTGATGGTTGCTCGTAGGCAAGGAAATCCAGGATTAAAGGCGTTAATTGAAC 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879300 TCAAAGGATTGATGGTTGCTCGTAGGCAAGGAAATCCAGGATTAAAGGCGTTAATTGAAC 879359 Query 838 GCGTTAATATTTCTTCTCCCATAACAGCCGAGAATTTAGGATATATGATAGGACCATCTA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879360 GCGTTAATATTTCTTCTCCCATAACAGCCGAGAATTTAGGATATATGATAGGACCATCTA 879419 Query 898 TTAATGCAGGAGGGCGTATAGGAGAATCTAACCTTGGAAGTCGTTTGTTGATTTCAGATG 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879420 TTAATGCAGGAGGGCGTATAGGAGAATCTAACCTTGGAAGTCGTTTGTTGATTTCAGATG 879479 Query 958 ATTCACAAGAACTTGAAATGCTTGCGATGAAATTGGATGTTCTCAATCAGAATCGTCGTT 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879480 ATTCACAAGAACTTGAAATGCTTGCGATGAAATTGGATGTTCTCAATCAGAATCGTCGTT 879539 Query 1018 TGATGGAATCTGCAATGTTGGAACAAGCAGAGGCAAAAGTTTTAACACAGTGTGATGATA 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879540 TGATGGAATCTGCAATGTTGGAACAAGCAGAGGCAAAAGTTTTAACACAGTGTGATGATA 879599 Query 1078 TTCAACAAGCTTCTGTTATTGTAGTAGAAGGAGATAGATGGCATCCTGGTATTGTGGGGT 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879600 TTCAACAAGCTTCTGTTATTGTAGTAGAAGGAGATAGATGGCATCCTGGTATTGTGGGGT 879659 Query 1138 TGTTGGCTGCACGTTTGAAAGAAAAGTTTGGTCGACCATCTTTCGCAATTTCTTTTGAGG 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879660 TGTTGGCTGCACGTTTGAAAGAAAAGTTTGGTCGACCATCTTTCGCAATTTCTTTTGAGG 879719 Query 1198 AAGATGGAAAAGGCATT 1214 ||||||||||||||||| Sbjct 879720 AAGATGGAAAAGGCATT 879736 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2284016466 Query= contig_000000000185 Length=481 Score E Sequences producing significant alignments: (Bits) Value gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus ... 872 0.0 >gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus str. psy62 chromosome, complete genome Length=1227328 Score = 872 bits (472), Expect = 0.0 Identities = 479/482 (99%), Gaps = 1/482 (0%) Strand=Plus/Plus Query 1 TTGGCATCTCAGTTGAAAGAAACAGCGATGGTCGCTAATAAGCGCTCTCTTCTGCGTGTA 60 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 109917 TTGGCATCTCAGTTGAAAGAAACAGCGATGGACGCTAATAAGCGCACTCTTCTGCGTGTA 109976 Query 61 GAAATTAATAAAGATCTTAATTCTCTGAAAGATACTCAAGATTCGATCAATAAATTAATG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109977 GAAATTAATAAAGATCTTAATTCTCTGAAAGATACTCAAGATTCGATCAATAAATTAATG 110036 Query 121 GGCACTAAAGCAGACGAACGCTTTAAATTTATTCAAGAAAGGGCAAGTTTTATAGATGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110037 GGCACTAAAGCAGACGAACGCTTTAAATTTATTCAAGAAAGGGCAAGTTTTATAGATGAT 110096 Query 181 GTAGGTACCTAATCAAAAAAGTAAAATAGCAAATATTAAGATTGGAAAACTTACTATTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110097 GTAGGTACCTAATCAAAAAAGTAAAATAGCAAATATTAAGATTGGAAAACTTACTATTGC 110156 Query 241 TCATTGGTATATTTAAGCGTTATATTCATCTATAGATTGATAGAAGAGAATATACGCTTA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110157 TCATTGGTATATTTAAGCGTTATATTCATCTATAGATTGATAGAAGAGAATATACGCTTA 110216 Query 301 TCTTTCTAGTAGCTTCATGCTATACAAGATTGAGTGATTACCAACATAAAAAAATCGGCA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110217 TCTTTCTAGTAGCTTCATGCTATACAAGATTGAGTGATTACCAACATAAAAAAATCGGCA 110276 Query 361 AAGGTACACCTACATGAGAGAAACAATGTTGAACCCTCAAGGAATAATGCGCT-GATGAT 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 110277 AAGGTACACCTACATGAGAGAAACAATGTTGAACCCTCAAGGAATAATGCGCTGGATGAT 110336 Query 420 TATGTTTATAATTCTGGTGTCTCTTTATTTTCTCAAAGGATTTTTTGCCCCTGTTCTCTC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110337 TATGTTTATAATTCTGGTGTCTCTTTATTTTCTCAAAGGATTTTTTGCCCCTGTTCTCTC 110396 Query 480 TG 481 || Sbjct 110397 TG 110398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 565788988 Query= contig_000000000186 Length=3441 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4194928490 Database: Candidatus_Liberibacter_asiaticus_psy62_genome.fasta Posted date: Jul 20, 2015 1:36 PM Number of letters in database: 1,227,328 Number of sequences in database: 1 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5