BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08...  662     0.0  
DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29...  246     9e-65


>DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). 
AED 0.01
Length=1863

 Score = 662 bits (358),  Expect = 0.0
 Identities = 358/358 (100%), Gaps = 0/358 (0%)
 Strand=Plus/Plus

Query  1     TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  681   TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  740

Query  61    CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741   CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  800

Query  121   TCCTCTTGCTCATGAAATCCCTTCTAAACGTGCCAAAACAAATGCCACACCTGAAGATCT  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  801   TCCTCTTGCTCATGAAATCCCTTCTAAACGTGCCAAAACAAATGCCACACCTGAAGATCT  860

Query  181   GTCGTCCACTTCAACCATCAATGATTCAATCGCTGCTAACTACATCAATAAAACCCCCAC  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  861   GTCGTCCACTTCAACCATCAATGATTCAATCGCTGCTAACTACATCAATAAAACCCCCAC  920

Query  241   ACCTACACCTCCCATTCCTGATCAAACACCTCCTGCCAAGCTTCCTAACTCCAATGCTTC  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  921   ACCTACACCTCCCATTCCTGATCAAACACCTCCTGCCAAGCTTCCTAACTCCAATGCTTC  980

Query  301   CAGCAATGAAGACGAAGAAGATGATAGAGACGAGGAAGAAAAAGTAGAGGACGAGAGA  358
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  981   CAGCAATGAAGACGAAGAAGATGATAGAGACGAGGAAGAAAAAGTAGAGGACGAGAGA  1038


>DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). 
Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36
Length=591

 Score = 246 bits (133),  Expect = 9e-65
 Identities = 136/137 (99%), Gaps = 1/137 (1%)
 Strand=Plus/Plus

Query  1    TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  317

Query  61   CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  377

Query  121  TCCTCTTGCTCAT-GAA  136
            ||||||||||||| |||
Sbjct  378  TCCTCTTGCTCATAGAA  394



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 16215877020


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5