BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Diaci_v2.0.ref.fasta 1,906 sequences; 498,892,910 total letters Query= Untitled_sequence Length=270 Score E Sequences producing significant alignments: (Bits) Value ScVcwli_3402 494 2e-138 ScVcwli_1061 158 3e-37 ScVcwli_2079 147 7e-34 >ScVcwli_3402 Length=1163934 Score = 494 bits (267), Expect = 2e-138 Identities = 270/271 (99%), Gaps = 1/271 (0%) Strand=Plus/Plus Query 1 CAGTACACTCTCCAACCAAACTTGAAGACTGGAAGCTTCAAGCTGACATTATCCTCAAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556756 CAGTACACTCTCCAACCAAACTTGAAGACTGGAAGCTTCAAGCTGACATTATCCTCAAGA 556815 Query 61 GAACAGATGGATTCAAAATCCAGCTGAAACCCCGCAAGAAACAAACTGTGGCCT-AACCG 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 556816 GAACAGATGGATTCAAAATCCAGCTGAAACCCCGCAAGAAACAAACTGTGGCCTAAACCG 556875 Query 120 TTGTTACTTCTCTTTCATTTGACCATGTTTATATTTTGATTTTTTGTACAAACTGTTTTT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556876 TTGTTACTTCTCTTTCATTTGACCATGTTTATATTTTGATTTTTTGTACAAACTGTTTTT 556935 Query 180 ATTTTTATGGCATTTTTCACTCCGCTTACATGTTTTATTTTTTTCTTTATGACATCCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556936 ATTTTTATGGCATTTTTCACTCCGCTTACATGTTTTATTTTTTTCTTTATGACATCCAAG 556995 Query 240 TCACATAAAGAAATATTGAAACTGTGAGCGG 270 ||||||||||||||||||||||||||||||| Sbjct 556996 TCACATAAAGAAATATTGAAACTGTGAGCGG 557026 Score = 143 bits (77), Expect = 9e-33 Identities = 103/116 (89%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1 CAGTACACTCTCCAACCAAACTTGAAGACTGGAAGCTTCAAGCTGACATTATCCTCAAGA 60 ||||||| |||||||||||||||||||||||||| || |||| || || || ||||||| Sbjct 560250 CAGTACATTCTCCAACCAAACTTGAAGACTGGAAACTCCAAGGGGATATAATTCTCAAGA 560309 Query 61 GAACAGATGGATTCAAAATCCAGCTGAAACCCCGCAAGAAACAAACTGTGGCCTAA 116 ||||||||||||||||| || | || | |||||||||||||||||||||||||||| Sbjct 560310 GAACAGATGGATTCAAAGTCAAACTTACACCCCGCAAGAAACAAACTGTGGCCTAA 560365 >ScVcwli_1061 Length=1644137 Score = 158 bits (85), Expect = 3e-37 Identities = 133/156 (85%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 1 CAGTACACTCTCCAACCAAACTTGAAGACTGGAAGCTTCAAGCTGACATTATCCTCAAGA 60 ||||||||||||||| |||| ||||||| ||||| |||||||||| ||||| ||||||| Sbjct 1067688 CAGTACACTCTCCAATCAAATTTGAAGATTGGAAAGTTCAAGCTGATATTATACTCAAGA 1067747 Query 61 GAACAGATGGATTCAAAATCCAGCTGAAACCCCGCAAGAAACAAACTGTGGCCTAACC-G 119 |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | | Sbjct 1067748 GAACAGATGGATTCAAAATCCAGCTGAAACCCCGCAGGAAACAACTTGTGGATTAAACTG 1067807 Query 120 TTGTTACTTCTCTTTCATTTGACCATGTTTATATTT 155 | | || ||||||| |||| || || |||| |||| Sbjct 1067808 CTCTCACCTCTCTTTTATTTAACAAT-TTTA-ATTT 1067841 >ScVcwli_2079 Length=95279 Score = 147 bits (79), Expect = 7e-34 Identities = 127/150 (85%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 7 ACTCTCCAACCAAACTTGAAGACTGGAAGCTTCAAGCTGACATTATCCTCAAGAGAACAG 66 ||||||||| |||| ||||||| ||||| |||||||||| ||||| ||||||||||||| Sbjct 76940 ACTCTCCAATCAAATTTGAAGATTGGAAAGTTCAAGCTGATATTATACTCAAGAGAACAG 76999 Query 67 ATGGATTCAAAATCCAGCTGAAACCCCGCAAGAAACAAACTGTGGCCTAACC-GTTGTTA 125 |||||||||||||||||||||||||||||| ||||||| ||||| ||| | | | | | Sbjct 77000 ATGGATTCAAAATCCAGCTGAAACCCCGCAGGAAACAACTTGTGGATTAAACTGCTCTCA 77059 Query 126 CTTCTCTTTCATTTGACCATGTTTATATTT 155 | ||||||| |||| || || |||| |||| Sbjct 77060 CCTCTCTTTTATTTAACAAT-TTTA-ATTT 77087 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 121717778376 Database: Diaci_v2.0.ref.fasta Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 498,892,910 Number of sequences in database: 1,906 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5