BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_cds.fa
           25,292 sequences; 34,155,564 total letters



Query= 457

Length=957
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrC003145.1.1Transient receptor potential cation channel trpm ...  418     3e-116


>DcitrC003145.1.1 Transient receptor potential cation channel trpm (AHRD V3.11 
*-* tr|A0A0A9Y3T5|A0A0A9Y3T5_LYGHE). AED 0.63
Length=759

 Score = 418 bits (226),  Expect = 3e-116
 Identities = 228/229 (99%), Gaps = 0/229 (0%)
 Strand=Plus/Minus

Query  238  CTCGTCATCATGGTCGTTTACTCCATCTACATCCGTAACTACACTCGTCGTTTTGTGTTT  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  CTCGTCATCATGGTCGTTTACTCCATCTACATCCGTAACTACACTCGTCGTTTTGTGTTT  208

Query  298  CAATATCTCATCCAACATATTGAACTGGTCGACGAAAAGTTGCAGCGAATATTTCACTTC  357
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  207  CAATATCTCATCCAACATATTGAACTGGTCGACGAAAAGTTGCAGCAAATATTTCACTTC  148

Query  358  GAGAATAGCGAGCTGAAAATTGCCACCATGGCTCAGCTGCCCGTCATCATTATCTATGGA  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  GAGAATAGCGAGCTGAAAATTGCCACCATGGCTCAGCTGCCCGTCATCATTATCTATGGA  88

Query  418  TCTACCCAGGGCATCAACTTTGGATTCAAGATCATCATTTTGAAGAGAA  466
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  87   TCTACCCAGGGCATCAACTTTGGATTCAAGATCATCATTTTGAAGAGAA  39


 Score = 222 bits (120),  Expect = 3e-57
 Identities = 126/129 (98%), Gaps = 0/129 (0%)
 Strand=Plus/Minus

Query  40   GTGAACATTTTGTTCGGCCTCCCTGGCTACTACAAGAAGACCAACATCCTGCTTTGTCTC  99
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  396  GTGAACATTTTGTTCGGCCTCCCTGGCTACTACAAGAAGACCAATATCCTGCTTTGTCTC  337

Query  100  TACACGATATTCCTGGTAACTTTCATTCCCATGTACATCCTCTACACGTTGTTCTTGAGG  159
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  336  TACACGATATTCCTGGTAACTTTCATTCCCATCTACATCCTCTATACGTTGTTCTTGAGG  277

Query  160  ATCAAACCG  168
            |||||||||
Sbjct  276  ATCAAACCG  268



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 31243682048


  Database: Dcitr_OGSv2.0_cds.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 34,155,564
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5