BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Diaci_v2.0.ref.fasta
           1,906 sequences; 498,892,910 total letters



Query= Untitled Sequence

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ScVcwli_2175                                                          353     4e-96


>ScVcwli_2175 
Length=2192383

 Score = 353 bits (191),  Expect = 4e-96
 Identities = 191/191 (100%), Gaps = 0/191 (0%)
 Strand=Plus/Plus

Query  1       GCTGACTCTGGCAATCCCATCAAGATCCCTGTCGGAGCTGAAACTCTGGGCAGAATTATC  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451209  GCTGACTCTGGCAATCCCATCAAGATCCCTGTCGGAGCTGAAACTCTGGGCAGAATTATC  451268

Query  61      AACGTTATTGGAGAACCCATTGACGAAAGAGGTCCCATTGATACCGACAAGTCTGCTGCC  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451269  AACGTTATTGGAGAACCCATTGACGAAAGAGGTCCCATTGATACCGACAAGTCTGCTGCC  451328

Query  121     ATCCACGCTGATGCTCCTGAGTTTGTGGAGATGAGTGTCGAACAAGAAATTCTGGTCACT  180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451329  ATCCACGCTGATGCTCCTGAGTTTGTGGAGATGAGTGTCGAACAAGAAATTCTGGTCACT  451388

Query  181     GGTATCAAGGT  191
               |||||||||||
Sbjct  451389  GGTATCAAGGT  451399


 Score = 231 bits (125),  Expect = 2e-59
 Identities = 125/125 (100%), Gaps = 0/125 (0%)
 Strand=Plus/Plus

Query  187     AAGGTCGTAGATCTGCTCGCCCCCTACGCTAAGGGAGGTAAGATCGGTCTGTTCGGAGGA  246
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  452513  AAGGTCGTAGATCTGCTCGCCCCCTACGCTAAGGGAGGTAAGATCGGTCTGTTCGGAGGA  452572

Query  247     GCTGGAGTAGGCAAGACTGTACTTATCATGGAGCTGATCAACAACGTAGCCAAGGCCCAT  306
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  452573  GCTGGAGTAGGCAAGACTGTACTTATCATGGAGCTGATCAACAACGTAGCCAAGGCCCAT  452632

Query  307     GGTGG  311
               |||||
Sbjct  452633  GGTGG  452637


 Score = 230 bits (124),  Expect = 8e-59
 Identities = 127/128 (99%), Gaps = 1/128 (1%)
 Strand=Plus/Plus

Query  185     TCA-AGGTCGTAGATCTGCTCGCCCCCTACGCTAAGGGAGGTAAGATCGGTCTGTTCGGA  243
               ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451697  TCACAGGTCGTAGATCTGCTCGCCCCCTACGCTAAGGGAGGTAAGATCGGTCTGTTCGGA  451756

Query  244     GGAGCTGGAGTAGGCAAGACTGTACTTATCATGGAGCTGATCAACAACGTAGCCAAGGCC  303
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451757  GGAGCTGGAGTAGGCAAGACTGTACTTATCATGGAGCTGATCAACAACGTAGCCAAGGCC  451816

Query  304     CATGGTGG  311
               ||||||||
Sbjct  451817  CATGGTGG  451824



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 141670971232


  Database: Diaci_v2.0.ref.fasta
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 498,892,910
  Number of sequences in database:  1,906



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5