BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_rna.fa 25,292 sequences; 49,157,538 total letters Query= Untitled_sequence Length=600 Score E Sequences producing significant alignments: (Bits) Value DcitrM005805.1.1Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-*... 1050 0.0 DcitrM005835.1.1Phosphoenolpyruvate carboxykinase (AHRD V3.11 ***... 638 0.0 DcitrM051815.1.2Phosphoenolpyruvate carboxykinase (AHRD V3.11 ***... 156 3e-37 DcitrM051815.1.1Phosphoenolpyruvate carboxykinase (AHRD V3.11 ***... 156 3e-37 DcitrM047430.1.3Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-*... 111 6e-24 DcitrM047430.1.2Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-*... 111 6e-24 DcitrM047430.1.1Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-*... 111 6e-24 >DcitrM005805.1.1 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-* tr|T1PGY2|T1PGY2_MUSDO). AED 0.10 Length=4552 Score = 1050 bits (568), Expect = 0.0 Identities = 590/600 (98%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 1 ACCCTGAAGCTACCATCAAAGATTGGCTGGGCAGACCATGGAATAAGAATTGCTCGACAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 ACCCTGAAGCTACCATCAAAGATTGGCTGGGCAGACCATGGAATAAGAATTGCTCGACAC 997 Query 61 CCGCAGCCCATCCCAACTCACGATTCTGTGTCCCCGCCGCGGAATGTCCTGCCATGGATC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 998 CCGCAGCCCATCCCAACTCACGATTCTGTGTCCCCGCCGCGGAATGTCCTGCCATGGATC 1057 Query 121 CCGACTGGCAATCCCCCCAGGGGGTGCCCATTAGTGCCATCATATTCGGAGGGAGAAGAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 CCGACTGGCAATCCCCCCAGGGGGTGCCCATTAGTGCCATCATATTCGGAGGGAGAAGAC 1117 Query 181 CAGAAGGGGTCCCCCTAGTGTACGAAGCTTTCGACTGGCAACATGGCGTATTCGTGGGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 CAGAAGGGGTCCCCCTAGTGTACGAAGCTTTCGACTGGCAACATGGCGTATTCGTGGGAG 1177 Query 241 CTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCCATCCTAAACG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 CTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCCATCCTAAACG 1237 Query 301 ACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTACAACACTGGT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 ACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTACAACACTGGT 1297 Query 361 TGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGTCAATTGGTTTA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 TGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGTCAATTGGTTTA 1357 Query 421 TAAAAGGACAAAGATGGGAAATTCATGTGGCCCGGGTTTGGAGACAACATTTCGCGTTCT 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1358 G-AAAGGACAAAGATGGGAAATTCATGTGGCCCGGGTTTGGAGACAACA-TTCGCGTTCT 1415 Query 481 CGACTGGATTTTCCAACGTGTCAACGGGATCAAAACCATTCGTCGCTTCTCTCCCATCGG 540 ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| Sbjct 1416 CGACTGGATTTTCCAACGTGTCAACGGGAACAAAACCGTTCGTCGCTTCTCCCCCATCGG 1475 Query 541 TTACATTTCCCGATTACAACCATAACGTTATTCAATCTCACCGATCTCTACTAAGACGAC 600 ||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||| Sbjct 1476 TTACA-TTCCCGATTACCACCATAACGTTA-TCAATCTCACCGATCTCTACGAAGACGAC 1533 >DcitrM005835.1.1 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *** tr|T1PGY2|T1PGY2_MUSDO). Similar to MCOT03557.0.CO XP_008472349.1. AED 0.19| InterPro:IPR035077,Pfam:PF00821| GO:0004611,GO:0006094 Length=1750 Score = 638 bits (345), Expect = 0.0 Identities = 369/380 (97%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 221 ACATGGCGTATTCGTGGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAA 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 ACATGGCGTATTCGTGGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAA 1068 Query 281 GGGGAAAGCCATCCTAAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGG 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 GGGGAAAGCCATCCTAAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGG 1128 Query 341 CCAATACCTACAACACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAAT 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 CCAATACCTACAACACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAAT 1188 Query 401 TTTCCACGTCAATTGGTTTATAAAAGGACAAAGATGGGAAATTCATGTGGCCCGGGTTTG 460 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1189 TTTCCACGTCAATTGGTTTAG-AAAGGACAAAGATGGGAAATTCATGTGGCCCGGGTTTG 1247 Query 461 GAGACAACATTTCGCGTTCTCGACTGGATTTTCCAACGTGTCAACGGGATCAAAACCATT 520 ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1248 GAGACAACA-TTCGCGTTCTCGACTGGATTTTCCAACGTGTCAACGGGAACAAAACCGTT 1306 Query 521 CGTCGCTTCTCTCCCATCGGTTACATTTCCCGATTACAACCATAACGTTATTCAATCTCA 580 ||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||||||| Sbjct 1307 CGTCGCTTCTCCCCCATCGGTTACATC-CCCGATTACCACCATAACGTTA-TCAATCTCA 1364 Query 581 CCGATCTCTACTAAGACGAC 600 ||||||||||| |||||||| Sbjct 1365 CCGATCTCTACGAAGACGAC 1384 Score = 315 bits (170), Expect = 4e-85 Identities = 170/170 (100%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1 ACCCTGAAGCTACCATCAAAGATTGGCTGGGCAGACCATGGAATAAGAATTGCTCGACAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 ACCCTGAAGCTACCATCAAAGATTGGCTGGGCAGACCATGGAATAAGAATTGCTCGACAC 896 Query 61 CCGCAGCCCATCCCAACTCACGATTCTGTGTCCCCGCCGCGGAATGTCCTGCCATGGATC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 CCGCAGCCCATCCCAACTCACGATTCTGTGTCCCCGCCGCGGAATGTCCTGCCATGGATC 956 Query 121 CCGACTGGCAATCCCCCCAGGGGGTGCCCATTAGTGCCATCATATTCGGA 170 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 CCGACTGGCAATCCCCCCAGGGGGTGCCCATTAGTGCCATCATATTCGGA 1006 >DcitrM051815.1.2 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *** tr|T1PGY2|T1PGY2_MUSDO). Similar to MCOT18490.0.CT XP_008482065.1. AED 0.19 Length=1659 Score = 156 bits (84), Expect = 3e-37 Identities = 278/374 (74%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 58 CACCC--GCAGCCCATCCCAACTCACGATTCTGTGTCCCCGCCGCGGAATGTCCTGCCAT 115 ||||| ||||| ||||| ||||| | |||||| || || | ||||||| |||| Sbjct 1236 CACCCAAGCAGCTCATCCTAACTCCAGGTTCTGTACTCCTGCATCTCAATGTCCCACCAT 1295 Query 116 GGATCCCGACTGGCAATCCCCCCAGGGGGTGCCCATTAGTGCCATCATATTCGGAGGGAG 175 ||||| ||||| |||| | | || || || || ||| ||||| ||||||||||| Sbjct 1296 TGATCCTAACTGGGAATCACATGAAGGTGTTCCGATCTCTGCTATCATCTTCGGAGGGAG 1355 Query 176 AAGACCAGAAGGGGTCCCCCTAGTGTACGAAGCTTTCGACTGGCAACATGGCGTATTCGT 235 |||||| | || |||||| | ||||| ||| | || |||||||||||||| |||||| | Sbjct 1356 AAGACCTCAGGGCGTCCCCTTGGTGTATGAATCATTTGACTGGCAACATGGTGTATTCCT 1415 Query 236 GGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCCATCCT 295 ||||| |||||||| |||||||| ||||| || || ||||| || || |||| ||| | Sbjct 1416 AGGAGCATCCATGAGAAGTGAGGCTACAGCGGCTGCAGAACACAAAGGTAAAGTTATCAT 1475 Query 296 AAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTACAA-C 354 | || || || || ||||||||||||||||| ||||||||||| | || || ||| | Sbjct 1476 GCATGATCCATTCGCTATGAGACCATTCTTCGGTTACAACTTTGGTGATTATCT-CAAGC 1534 Query 355 ACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGTCAATT 414 | ||| || | | || | || |||||| ||| || || || | ||||| || || | Sbjct 1535 ATTGGCTGAGTATGGAGCAGAGGACCAATGCTAAACTTCCTAAGGTCTTCCATGTGAACT 1594 Query 415 GGTTTATAAAAGGA 428 |||| | ||||||| Sbjct 1595 GGTTCAGAAAAGGA 1608 >DcitrM051815.1.1 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *** tr|T1PGY2|T1PGY2_MUSDO). Similar to MCOT18490.0.CT XP_008482065.1. AED 0.19 Length=1659 Score = 156 bits (84), Expect = 3e-37 Identities = 278/374 (74%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 58 CACCC--GCAGCCCATCCCAACTCACGATTCTGTGTCCCCGCCGCGGAATGTCCTGCCAT 115 ||||| ||||| ||||| ||||| | |||||| || || | ||||||| |||| Sbjct 1236 CACCCAAGCAGCTCATCCTAACTCCAGGTTCTGTACTCCTGCATCTCAATGTCCCACCAT 1295 Query 116 GGATCCCGACTGGCAATCCCCCCAGGGGGTGCCCATTAGTGCCATCATATTCGGAGGGAG 175 ||||| ||||| |||| | | || || || || ||| ||||| ||||||||||| Sbjct 1296 TGATCCTAACTGGGAATCACATGAAGGTGTTCCGATCTCTGCTATCATCTTCGGAGGGAG 1355 Query 176 AAGACCAGAAGGGGTCCCCCTAGTGTACGAAGCTTTCGACTGGCAACATGGCGTATTCGT 235 |||||| | || |||||| | ||||| ||| | || |||||||||||||| |||||| | Sbjct 1356 AAGACCTCAGGGCGTCCCCTTGGTGTATGAATCATTTGACTGGCAACATGGTGTATTCCT 1415 Query 236 GGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCCATCCT 295 ||||| |||||||| |||||||| ||||| || || ||||| || || |||| ||| | Sbjct 1416 AGGAGCATCCATGAGAAGTGAGGCTACAGCGGCTGCAGAACACAAAGGTAAAGTTATCAT 1475 Query 296 AAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTACAA-C 354 | || || || || ||||||||||||||||| ||||||||||| | || || ||| | Sbjct 1476 GCATGATCCATTCGCTATGAGACCATTCTTCGGTTACAACTTTGGTGATTATCT-CAAGC 1534 Query 355 ACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGTCAATT 414 | ||| || | | || | || |||||| ||| || || || | ||||| || || | Sbjct 1535 ATTGGCTGAGTATGGAGCAGAGGACCAATGCTAAACTTCCTAAGGTCTTCCATGTGAACT 1594 Query 415 GGTTTATAAAAGGA 428 |||| | ||||||| Sbjct 1595 GGTTCAGAAAAGGA 1608 >DcitrM047430.1.3 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-* tr|T2KG11|T2KG11_BLAGE). Similar to MCOT18490.0.CT XP_008482065.1. AED 0.10| InterPro:IPR035077,Pfam:PF00821| GO:0004611,GO:0006094 Length=2213 Score = 111 bits (60), Expect = 6e-24 Identities = 195/261 (75%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 231 TTCGTGGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCC 290 ||| | ||||| |||||||| |||||||| ||||| || || ||||| || || |||| Sbjct 528 TTCCTAGGAGCATCCATGAGAAGTGAGGCTACAGCGGCTGCAGAACACAAAGGTAAAGTT 587 Query 291 ATCCTAAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTA 350 ||| | | || || || || ||||||||||||||||| ||||||||||| | || || Sbjct 588 ATCATGCATGATCCATTCGCTATGAGACCATTCTTCGGTTACAACTTTGGTGATTATCT- 646 Query 351 CAA-CACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGT 409 ||| || ||| || | | || | || |||||| ||| || || || | ||||| || Sbjct 647 CAAGCATTGGCTGAGTATGGAGCAGAGGACCAATGCTAAACTTCCTAAGGTCTTCCATGT 706 Query 410 CAATTGGTTTATAAAAGGA-CAAAGATGGGAAATTCATGTGGCCCGGGTTTGGAGACAAC 468 || ||||| | ||||||| | || | | ||||| ||||||| || |||||||| || Sbjct 707 GAACTGGTTCAGAAAAGGATCTCAG-GGAG-AATTCCTGTGGCCTGGATTTGGAGAGAAT 764 Query 469 ATTTCGCGTTCTCGACTGGAT 489 | |||| ||||| |||||||| Sbjct 765 A-TTCGAGTTCTAGACTGGAT 784 >DcitrM047430.1.2 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-* tr|T2KG11|T2KG11_BLAGE). Similar to MCOT18490.0.CT XP_008482065.1. AED 0.13| InterPro:IPR035077,Pfam:PF00821| GO:0004611,GO:0006094 Length=2046 Score = 111 bits (60), Expect = 6e-24 Identities = 195/261 (75%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 231 TTCGTGGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCC 290 ||| | ||||| |||||||| |||||||| ||||| || || ||||| || || |||| Sbjct 361 TTCCTAGGAGCATCCATGAGAAGTGAGGCTACAGCGGCTGCAGAACACAAAGGTAAAGTT 420 Query 291 ATCCTAAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTA 350 ||| | | || || || || ||||||||||||||||| ||||||||||| | || || Sbjct 421 ATCATGCATGATCCATTCGCTATGAGACCATTCTTCGGTTACAACTTTGGTGATTATCT- 479 Query 351 CAA-CACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGT 409 ||| || ||| || | | || | || |||||| ||| || || || | ||||| || Sbjct 480 CAAGCATTGGCTGAGTATGGAGCAGAGGACCAATGCTAAACTTCCTAAGGTCTTCCATGT 539 Query 410 CAATTGGTTTATAAAAGGA-CAAAGATGGGAAATTCATGTGGCCCGGGTTTGGAGACAAC 468 || ||||| | ||||||| | || | | ||||| ||||||| || |||||||| || Sbjct 540 GAACTGGTTCAGAAAAGGATCTCAG-GGAG-AATTCCTGTGGCCTGGATTTGGAGAGAAT 597 Query 469 ATTTCGCGTTCTCGACTGGAT 489 | |||| ||||| |||||||| Sbjct 598 A-TTCGAGTTCTAGACTGGAT 617 >DcitrM047430.1.1 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-* tr|T2KG11|T2KG11_BLAGE). Similar to MCOT18490.0.CT XP_008482065.1. AED 0.04| InterPro:IPR035077,Pfam:PF00821| GO:0004611,GO:0006094 Length=2557 Score = 111 bits (60), Expect = 6e-24 Identities = 195/261 (75%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 231 TTCGTGGGAGCTTCCATGAGGAGTGAGGCGACAGCAGCGGCTGAACATAAGGGGAAAGCC 290 ||| | ||||| |||||||| |||||||| ||||| || || ||||| || || |||| Sbjct 872 TTCCTAGGAGCATCCATGAGAAGTGAGGCTACAGCGGCTGCAGAACACAAAGGTAAAGTT 931 Query 291 ATCCTAAACGACCCGTTTGCAATGAGACCATTCTTCGGCTACAACTTTGGCCAATACCTA 350 ||| | | || || || || ||||||||||||||||| ||||||||||| | || || Sbjct 932 ATCATGCATGATCCATTCGCTATGAGACCATTCTTCGGTTACAACTTTGGTGATTATCT- 990 Query 351 CAA-CACTGGTTGGATCTCCAGAAAAGACCCAATGTTAAGCTGCCCAAAATTTTCCACGT 409 ||| || ||| || | | || | || |||||| ||| || || || | ||||| || Sbjct 991 CAAGCATTGGCTGAGTATGGAGCAGAGGACCAATGCTAAACTTCCTAAGGTCTTCCATGT 1050 Query 410 CAATTGGTTTATAAAAGGA-CAAAGATGGGAAATTCATGTGGCCCGGGTTTGGAGACAAC 468 || ||||| | ||||||| | || | | ||||| ||||||| || |||||||| || Sbjct 1051 GAACTGGTTCAGAAAAGGATCTCAG-GGAG-AATTCCTGTGGCCTGGATTTGGAGAGAAT 1108 Query 469 ATTTCGCGTTCTCGACTGGAT 489 | |||| ||||| |||||||| Sbjct 1109 A-TTCGAGTTCTAGACTGGAT 1128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27902011850 Database: Dcitr_OGSv2.0_rna.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 49,157,538 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5