BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Diaphorina_citri_genome_v1.1.fasta
           161,988 sequences; 485,705,082 total letters



Query= 3546

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|645506004|ref|NW_007377989.1|  Diaphorina citri unplaced genom...  344     2e-93
gi|645507975|ref|NW_007377539.1|  Diaphorina citri unplaced genom...  143     9e-33


>gi|645506004|ref|NW_007377989.1| Diaphorina citri unplaced genomic scaffold, Diaci psyllid genome 
assembly version 1.1 scaffold555, whole genome shotgun sequence
Length=299759

 Score = 344 bits (186),  Expect = 2e-93
 Identities = 190/192 (99%), Gaps = 0/192 (0%)
 Strand=Plus/Minus

Query  1      ATGACGTTGAGTCGGCTGTCTCAGTCAAATGAATTGTTACAATGGATTTTTATCGCAGCA  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27300  ATGACGTTGAGTCGGCTGTCTCAGTCAAATGAATTGTTACAATGGATTTTTATCGCAGCA  27241

Query  61     AGTATCGCTGCAGAATCTACTGGTGCACTAAGAACCATACCTTCAAGCCTTAAGGAACTA  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27240  AGTATCGCTGCAGAATCTACTGGTGCACTAAGAACCATACCTTCAAGCCTTAAGGAACTA  27181

Query  121    CATCATACTATTGGAATGGAACACCAGTGCTCCGGAGTTCCTCAGGGTTGGATAAAGCGC  180
              |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  27180  CATCATACTATTGGAATGGAACACCAGTGCTCCGGAGTTCCTCAGGGTCGGATAAAGCGC  27121

Query  181    CCTTCTAAGGAG  192
              ||||||||| ||
Sbjct  27120  CCTTCTAAGTAG  27109


 Score = 189 bits (102),  Expect = 1e-46
 Identities = 104/105 (99%), Gaps = 0/105 (0%)
 Strand=Plus/Minus

Query  88     CTAAGAACCATACCTTCAAGCCTTAAGGAACTACATCATACTATTGGAATGGAACACCAG  147
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27066  CTAAGAACCATACCTTCAAGCCTTAAGGAACTACATCATACTATTGGAATGGAACACCAG  27007

Query  148    TGCTCCGGAGTTCCTCAGGGTTGGATAAAGCGCCCTTCTAAGGAG  192
              |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  27006  TGCTCCGGAGTTCCTCAGGGTTGGATAAAGCGCCCTTCTAAGTAG  26962


 Score = 172 bits (93),  Expect = 1e-41
 Identities = 95/96 (99%), Gaps = 0/96 (0%)
 Strand=Plus/Minus

Query  1      ATGACGTTGAGTCGGCTGTCTCAGTCAAATGAATTGTTACAATGGATTTTTATCGCAGCA  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27420  ATGACGTTGAGTCGGCTGTCTCAGTCAAATGAATTGTTACAATGGATTTTTATCGCAGCA  27361

Query  61     AGTATCGCTGCAGAATCTACTGGTGCACTAAGAACC  96
              ||||| ||||||||||||||||||||||||||||||
Sbjct  27360  AGTATGGCTGCAGAATCTACTGGTGCACTAAGAACC  27325


>gi|645507975|ref|NW_007377539.1| Diaphorina citri unplaced genomic scaffold, Diaci psyllid genome 
assembly version 1.1 scaffold102, whole genome shotgun sequence
Length=350682

 Score = 143 bits (77),  Expect = 9e-33
 Identities = 79/80 (99%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  189    GGAGCAGCCGGCAACAATTTATGAGCAGACCATCTCAAAACAGGTCGCAAACCATGTCGT  248
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  36005  GGAGCAGCCGGCAACAATTTATGAGCAGACCATCTCAAAACAGGTCGCAAACCATGTCGT  36064

Query  249    CCTGGTCGCGAGATACAAAC  268
              ||||||||| ||||||||||
Sbjct  36065  CCTGGTCGCAAGATACAAAC  36084


 Score = 97.1 bits (52),  Expect = 7e-19
 Identities = 52/52 (100%), Gaps = 0/52 (0%)
 Strand=Plus/Plus

Query  1      ATGACGTTGAGTCGGCTGTCTCAGTCAAATGAATTGTTACAATGGATTTTTA  52
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  19757  ATGACGTTGAGTCGGCTGTCTCAGTCAAATGAATTGTTACAATGGATTTTTA  19808



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 118928868318


  Database: Diaphorina_citri_genome_v1.1.fasta
    Posted date:  Jul 14, 2015 11:03 AM
  Number of letters in database: 485,705,082
  Number of sequences in database:  161,988



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5